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I got error
i have install from source
and then run
sjaracne local -e ./test_data/inputs/BRCA100.exp -g ./test_data/inputs/tf.txt -n 2 -o ./test_data/outputs/cwl/cwltool/SJARACNE_out.final
…
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I have installed ANACONDA, python3.6 environemnt and all required packages, but when I run this script, I get error infromations.
`(python3.6) D:\Users\guozi\Anaconda3\pkgs\SJARACNe-master>sjaracn…
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`glob: $(inputs.outputVcf).tbi` is better than `glob: $(inputs.outputVcf + ".tbi")`
Many CWL runners (including `cwltool`) will be able to parse the first way without calling out to a Javascript en…
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Hello,
I am running PGAP (2022-02-10.build5872) on docker ( version 20.10.10, build b485636) on Mac Catalina (10.15.7).
I am running the test genome after installation and getting a similar pro…
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I tried to use `**` in [a CWL tool definition](https://github.com/adamnovak/amazon-genomics-cli/blob/6a7e8421ef66b9ca9235b7794a0d04a736d163d6/examples/demo-cwl-project/workflows/nontrivial/sort-file.c…
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Needs to manually run the `docker login docker.synapse.org` in the instance. Otherwise, workflow will raise below errror:
```
INFO:cwltool:['docker', 'pull', 'docker.synapse.org/syn26720835/scoring-…
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``` bash
make coverage.html
make coverage-report fails
```
these commands fail due to the following error:
``` bash
Finished processing dependencies for cwltool==1.0.20170309164828
export CO…
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It seems that the required cwltool version is no more available in common conda channels.
Should we expect errors if we run with a more recent version?
```
PackagesNotFoundError: The following pa…
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Dear Austin,
I have both cwltool and azimuth-annotate installed:
> cwltool pipeline.cwl
INFO /mnt/efs/home/stb3865/software/anaconda3/bin/cwltool 3.1.20211107152837
INFO Resolved 'pipeline.cwl' …
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400MiB is doable, but smaller is better
([via](https://github.com/carpentries-incubator/cwl-novice-tutorial/pull/50#discussion_r754368816))