-
Hi,
I'm reinstalling cactus due to conflict in the environment.
I recompiled the `kyoto` libraries. Now what I did was
```
git clone https://github.com/ComparativeGenomicsToolkit/cactus.git
c…
-
Hi,
xTea works well for L1/Alu/SVA, but I got some errors in HERV.
First error is like below.
`Traceback (most recent call last):
File "/home/sijaewoo/tools/xTea/xtea/x_TEA_main.py", line 1118, …
-
https://mp.weixin.qq.com/s/J8RbqgJtNlnc7bsLJJUPGA
ixxmu updated
1 month ago
-
Hello,
I have several questions here, but first, I was running the sc_long_pipeline and got this message:
04:12:28 AM Mon Nov 06 2023 Demultiplex done
Running FLAMES pipeline...
Error in sc_long…
-
Full reindex on DEV to test out the round 5 efficiency updates from Karl's changes, but encounter hundreds of such errors:
```
[2024-06-22 07:00:07] ERROR in es_writer:95: Failed to write doc of u…
-
For the tutorials of space related analysis, such as mapping, spaceflow and stagate. There is a bug with default parameters and inputs.
Code:
```
adata = sc.datasets.visium_sge(sample_id="V1_Huma…
-
Hi there,
Thank you again for helping me the other day with the issues I was having. I've been able to run bambu successfully on some of my samples, and I have a couple of follow-up questions (I ho…
-
-
Hi Tobias:
In my experiment(1mM 4sU pulse for 30 min), before library construction, all the steps followed the standard protocol of SLAMseq, after total RNA extraction the rRNAs were removed from t…
-
Hi,
thank you for collapse_annotation.py script. I however, get the error below which I could not figure. Could you kindly assist to edit the script.
Traceback (most recent call last):
File…