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Hi,
I want to use the MSfragger to bulid the DDA-based spectral library but found that no “library.tsv” file was generated in the result file. What could be the reason for this ?
I'm sure that …
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**Describe the bug**
Gimme motifs is not apparently using the -f value provided.
**To Reproduce**
I've run gimme motifs commnad providing input, background and genome in fasta format with the -…
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I want to analyze differential binding of various histone marks and several questions pop up during analysis:
1. Why diffR() is only using the ChIP, but not the input like enrichR()? Isn't that nec…
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I am running the following command in a bash script:
module load python/3.7.x-anaconda
TOBIAS BINDetect --motifs /endosome/work/GCRB/s161282/Databases/jaspar_motif_files/jaspar_motifs.meme \
--…
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Dear @rpetit3 ,
I'd like to submit one of our bactopia assembled and annotated genomes. From the docs I saw that SKESA is the default assembler. Is there any logfile produced by bactopia which keeps …
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Hi Shujun,
My EDTA run with both with test data and mydata does't yield any DNA TE but LTR and helitorn works okay.
wondering what might be the issues,
My log report says - GAMAA library issue? d…
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As shown in the [documentation example](https://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/rmsk2bed.html#example), the seventh column is some non-integer number. When…
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Hello,
I tried running the ananse binding with your example data. However, when I try it. It gives me an error right at the end as shown here. It does not give exactly why it fails. A colleague ment…
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I'd like to compare the results I get from CellOracle with my ATAC data and with mouse ATAC atlas. Since my data is mapped to mm10 I'd like to run `liftover` on the atlas data. However, is it correct …
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I started to work on dependencies needed for interproscan. Here a resume was is needed: https://github.com/ebi-pf-team/interproscan/issues/95
7 dependencies were missing... I'm close to have resol…