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Hi,
Thanks for writing a great programme. I am sadly running into an issue which I have so far been unable to resolve or track down the precise cause. I am using MitoHifi on a HPC that uses the slu…
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Unite dataset imported in CLB lacks Higher taxonomy, this issue appeared on the latest version of the dataset on CLB, the GBIF source doesn't have this problem
Example Sh0887892.09fu
On CLB los…
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To Whom it May Concern
I'm working on a HPC with singularity but not the Sanger farm. I was wondering if you have any advice on how to create a nextflow.config file to use singularity with slurm. S…
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Try to calculate the depth on a BAM file around 1Gb, got a prompt: out of memory.
The command I performed is:
mosdepth -Q 10 prefix
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Heads up for the devs: I am trying out ITK examples in latest JupyterLab 3.0, but unfortunately getting following error message:
`Error displaying widget: model not found`
All packages are insta…
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Hi, I am doing registration of acrobat 2023 dataset, and I am trying to use valis_acrobat_2023.py. I noticed that in order to use the program, we need to pass four CSV files as arguments, but I don't …
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Hi, I am using a Linux HPC system to use msconvert to convert .WIFF files to .mzML. We can only use Singularity on HPC, and do not have root access. I am using the docker container provided by pwiz an…
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### Description of the bug
I'm running the pipeline and getting this error:
ERROR ~ Error executing process > 'NFCORE_SCNANOSEQ:SCNANOSEQ:UCSC_GTFTOGENEPRED'
Caused by:
Failed to pull singul…
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Dear Kwok,
After running SEPIA for the participants, now I want to corregister the subject Chimap to AHEAD template. So, I used the SEPIA GUI for this but the problem is, it is very slow. I have used…
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**Describe the bug**
Loading directories with 100's of files - of any type - takes a long time.
**To Reproduce**
Open a folder with >100 .images or .fits files.
**Expected behavior**
An imm…