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Datasets need to be cleaned and normalized before scanorama integration (#2).
I identified the following steps following these tutorials:
* https://ppapasaikas.github.io/ECCB2018_SC/
* https://nb…
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Want to be able to quickly provide interface for incorporating new methods with simple wrappers. Definitely for imputation methods, but probably other functions too.
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@kechrisk
1. One imputation method is the half-minimum approach, where we impute 0's with half the minimum value for that compound. Do we actually want to use the minimum across all patients & re…
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This behaviour seems to be a bug:
```R
library(mice)
data
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Hi,
I installed mice 3.3.0, my R version is 3.4.2. It seems that command mice() automatically sets imputation method for all variables to 'pmm'. When I run this script from the package documentatio…
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The IRV paper (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2750043/) argues for the use of the Boltzmann-Enhanced Discrimination of the Receiver Operating Characteristic (BEDROC) metric instead of th…
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It looks like the missForest package isn't tibble friendly. If you want to pass a tibble into the simputation function impute_mf, the following error pops up.
``` r
library(tidyverse)
library(…
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Hi,
I am using MAGIC in comparison with a few different methods and I get unsatisfactory results in all benchmarks, which made me wonder if I am doing something wrong. I am masking parts of the exp…
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Dear Bo. You did an excellent job.
However, I met with something error in using metaX. I am trying to use the Normalization module in metaX package to fix my data. Although it did work with your ex…
wtpku updated
5 years ago