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Currently all of the AEAD implementations do two passes over the plaintext/ciphertext when encrypting/decrypting respectively: for encryption, they encrypt the plaintext in the first pass, and authent…
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Using rodbc:
res
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### New Feature Summary
- subtask of https://github.com/clamsproject/aapb-evaluations/issues/3 , particularly as a part of "pipeline-runner" component.
- also almost duplicate to https://github.c…
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Common 1-N implementations such as presented in #4 use KD-trees such as [`sklearn`'s KMeans](https://github.com/scikit-learn/scikit-learn/blob/82df48934eba1df9a1ed3be98aaace8eada59e6e/sklearn/cluster/…
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I feel `rpy2` is unreliable, the R packages are cumbersome to install and a lot of additional dependencies. On top of that, the R methods are relatively slow compared to the `infercnv` algorithm in Py…
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Please review the configuration model thoroughly and suggest new required constraints.
- flow/node names within a pipeline must not be empty and must be unique
- parameters within an algorithm/node mu…
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Firstly, the check function is sucessfully performed with the following command:
raxml-ng --msa check-final-merge.min4.fasta --model TVM+I+G4 --check --prefix check
Then I run the following comman…
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The goal of this ticket is to efficiently implement the sieve of atkin. This first version is a step in that direction.
Paper on the sieve can be found at http://bit.ly/sieveatkin
The implementati…
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At the top of doOneRound in McRaptorSuboptimalPathProfileRouter, ~we~ I put a comment that
```
// We never propagate more than one state from the same previous pattern _sequence_
// e.g. don't ha…
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This is a meta-issue for keeping track of progress on implementing differentiable higher-order functions from SciPy in JAX, e.g.,
- [ ] `scipy.sparse.linalg.gmres` and `cg`: matrix-free linear solv…