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Hi Vadim,
Thanks for this amazing software.
I want to analyze DIA data using a DDA library that was constructed from MSFragger. The actual LC gradient is 40 minutes, but after building the library, …
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Hi, I have a peptidomics run with a DB with pre-digested peptides, including those with one missed cleavage. I have recently discovered `-ignoreMetCleavage 1 -enzyme 9`, which I have started using. Af…
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Have been trying to run the example for signalp4 and it seems to run well, except the result is not returned, gor the same error with targetp.
step1_sp4
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Hello.
When running RoseTTAFold-All-Atom using the following input YAML config file, I observed that the inference code returned a `.pdb` file that contains a predicted protein structure with the f…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
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**Steps to Reproduce**
1. Switch to Macro
2. Open file
[ketcher (select edit).zip](https://github.com/epam/ketcher/files/14931443/ketcher.select.edit.zip)
3. Sequence mode >> Select **Peptides…
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Hi John,
I've got some SingalP6 output I'd like to include in my annotate stage. I've tried the --signalp method but it threw an error. I'm using funannotate v1.8.7. I'll pop in the error then a he…
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### Context
Unable to create new bacteria transcriptome indices after merging in new mappings via https://github.com/AlexsLemonade/refinebio/pull/3366.
In order to create a new transcriptome ind…
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I am trying to compare MaxQuant v 2.4 [mqpar..xml.txt](https://github.com/vdemichev/DiaNN/files/11358777/mqpar.xml.txt) with DIA-NN v 1.8.1
```
diann.exe --f "C:\Users\animeshs\230421_plasma\New\…
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Hi,
after a long time, i think i can train my PointNet on the refined-dataset. But as you said, the indicator is after a manner.So i turn my eyes to bigger dataset.
In the paper , you descr…