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Hi peptideShaker team!
I would like to generate the QC plots from the **Validation** tab and customise them at will using the information exported in the peptideShaker built-in reports. I can easil…
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Hi team,
My SearchGUI run data failed to import into peptide shake- it just said "cancelled import" (sorry can't recall exact message), after completing the entire run. Last few lines of report her…
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From
{"extra": {}, "version_major": "17.09"}
to
{
"extra": {},
"version_major": "18.05"
}
1) Save db :
pg_dumpall -v -U postgres -f dumpall.20180831.dump
2) save files & dat…
vloux updated
6 years ago
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stuff I'd like added or changed:
- [x] Add filename to each scan
- [x] Separate protein accession and protein description
- [x] Include sequence without PTMs
- [x] Mark contaminants
- [x] Add d…
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Validation of mzTab files fails if the `title` field is missing in the metadata section (for a complete submission).
The mzTab specification indicates that this is an optional field though.
The lo…
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I keep getting fatal results which I can't find the reason to. attached is my output:
```
MSFragger version MSFragger-20171106
(c) University of Michigan
Sequence database filtered and tagged …
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I am unable to find any loop-links or mono-links reported in the pepXML file after performing a cross-linking search--however, I do see them in the allPsms.mytsv file.
Thanks.
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Hi there :smile:
I am writing a bash script combining the power of SearchGUI and PeptideShaker. However, I cannot get them to work properly, as when I try to read the search result files produced …
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Hi-
I'm testing Peptide Shaker 1.16.15 with XTandem on 19 Orbitrap .raw files from a 2D lc/ms/ms run, run on a windows 7 box (offline) with 24GB RAM. SearchGUI 3.2.20 processes the data (msconvert…