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Hi,
How to convert vcf format to lfmm genotype format? How to deal with heterozygosity and missing data in vcf? I can only see 0 and 1 in example data.
Best wishes,
Kun
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Is it possible to read haploid dosages with `pgenlib.PgenReader`?
thanks,
Jared
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Current variant or group ids are of form chrCHR_POS_REF_ALT, e.g. 'chr1_100001_A_T'. This is not in line with other data, where identifiers such as 'CHR:POS:REF:ALT' and 'CHR-POS-REF-ALT' are being us…
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**"OpenSSH for Windows" version**
7.7.2.1
Client version, although in verbose mode it claims "OpenSSH 8.2p1" in debug output (see below)
**Server OperatingSystem**
Linux
**Client Operatin…
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**Do you want to request a *feature* or report a *bug*?**
Bug
**What is the current behavior?**
At git clone I get a speed limit about 130 KiB/s if I use Gitextension package with ssh.
**If the cu…
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### Microsoft PowerToys version
0.81.1
### Installation method
PowerToys auto-update
### Running as admin
No
### Area(s) with issue?
ColorPicker
### Steps to reproduce
When I start PowerToys,…
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```
What steps will reproduce the problem?
First acknowledge you and the job, I am speaking Spanish and use the PDF
class, it turns out that when you have many special characters like "ñ, á,
é, í, ó …
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```
What steps will reproduce the problem?
First acknowledge you and the job, I am speaking Spanish and use the PDF
class, it turns out that when you have many special characters like "ñ, á,
é, í, ó …
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Hi Joelle，
It will be helpful to implement a ` --clump` option for LD clumping to only receive independent lead SNPs
Thanks
Shicheng
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I generated a cellSNP vcf file from snRNA-Seq comprised of three different donors. I'd like to identify the barcodes belonging to one of the donors using its corresponding genotype. I recently tried t…