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I am trying to figure out how Evodock works.
Could be that I am mistaken and didnt get the real pourpose of the tool. I am trying to use:
> Local assembly - Predicting assembly structure from mu…
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CharFilters and TokenFilters may alter token lengths, meaning that subsequent filters cannot perform simple arithmetic to calculate the original ("correct") offset of a character in the interior of th…
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Hi there,
I am using slim to simulate selection a denovo mutation and then pyslim to recapitate the genomic background. The versions I am using are python-3.12.4, pyslim-1.0.4, slim-4.3, msprime-1.…
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I think it's worth designating BA.2 with ORF1b:S959P
It doesn't seem to be in a currently designated sublineage of BA.2
It makes up a large fraction of all BA.2 in India, about 3% of all global…
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Creating this thread to post potentially useful info about _Bacillus subtilis_ that people come across.
Quick background: _Bacillus subtilis_ is a bacterium that is widely used in industrial biotec…
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**Description**
Hi Robert! It's me again, I think I've found another bug
I am running the snippy workflow, I passed the bootstrap options to gubbins and it ran flawlessly, except that when I check…
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Hi developers, I've been having great experience with tsdate 0.2.0 so far. There is one thing which I don't fully understand: associated with each node there is a gamma distribution (with mean and var…
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The `opt.path` is optional from now on (see #141).
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**Description**
**Sub-lineage of:** KP.3
**Earliest sequence:** 2024-3-9, Tasmania — EPI_ISL_19140364
**Most recent sequence:** 2024-6-16, Canada, Alberta — EPI_ISL_19222338
**Continents circulati…
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Hi @FerRacimo,
I seem to be running into the above error. Once I get the error, the program continues running and only produces the error output line over and over again. I can provide an input file …