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tskit-dev
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pyslim
Tools for dealing with tree sequences coming to and from SLiM.
MIT License
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23
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Typo in `recapitate` function docstring
#347
daikitag
closed
5 days ago
1
Update methods.py
#346
daikitag
closed
5 days ago
1
Strange warning in recapitation
#345
trevorcousins
opened
2 weeks ago
2
Fix mutation rate in time units example
#344
lkirk
closed
3 weeks ago
2
Recapitation for complex demography with populations that died out
#343
Luker121
closed
3 weeks ago
11
Fix codecov
#342
benjeffery
closed
3 months ago
0
Discrepancies in diversity after recapitation and mutation overlay
#340
AudeCaizergues
opened
4 months ago
1
default sex ratio 0.0
#339
petrelharp
opened
5 months ago
1
update quickreference list at top of docs
#338
petrelharp
opened
6 months ago
0
Update vignette_space.md
#337
jiseonmin
closed
7 months ago
2
Potential to use .frequencies() method in /tutorial.html
#336
hyanwong
opened
7 months ago
0
fix navigation with keys warning
#335
petrelharp
closed
8 months ago
2
Suggesting an edit for vignette_space.slim
#333
jiseonmin
closed
8 months ago
1
Suggestion for vignette: a spatial simulation
#332
jiseonmin
closed
8 months ago
2
edges are lost from tree sequence after SLiM step
#331
ShyamieG
closed
6 months ago
6
Update docs deps and theme
#330
benjeffery
closed
9 months ago
1
AttributeError in jsonschema
#329
ans6160
closed
9 months ago
3
typo fix metdadata
#328
Tatianabellagio
closed
10 months ago
2
Annotating tree sequence with pre-existing (node) metadata can lead to erroneous metadata
#327
clwgg
opened
10 months ago
1
add new methods to the API docs
#326
petrelharp
closed
10 months ago
1
Upgrade docs
#324
benjeffery
closed
11 months ago
1
release tasks
#323
petrelharp
opened
11 months ago
0
removes allclose, closes #321
#322
petrelharp
closed
11 months ago
1
recapitation root time auto-adjust fails with root times > 1e5, resulting in an `msprime.InputError`
#321
petrelharp
closed
11 months ago
2
Update time_units.md
#320
petrelharp
closed
11 months ago
2
explain no adjustment needed for WF sims
#319
petrelharp
closed
11 months ago
1
test on annotating tsinfer'ed tree sequence
#317
petrelharp
opened
1 year ago
0
provide example of annotating existing mutations
#316
petrelharp
opened
1 year ago
0
tsinfered tree sequences don't have 'type' key in top-level metdata but `set_tree_sequence_metadata` expects they do
#315
petrelharp
opened
1 year ago
0
Bump cache number
#314
benjeffery
closed
1 year ago
0
copy over tskit dependencies DO NOT MERGE
#313
petrelharp
closed
1 year ago
1
release tasks
#312
petrelharp
closed
11 months ago
0
This *actually* fixes the bug.
#311
petrelharp
closed
1 year ago
1
version bump
#310
petrelharp
closed
1 year ago
0
docs for convert alleles (closes #178)
#309
petrelharp
closed
1 year ago
0
deal with varying root times in recapitate (closes #307)
#308
petrelharp
closed
1 year ago
9
recapitate has surprisingly small diversity if WF simulation is started and saved in `late`
#307
petrelharp
closed
1 year ago
7
add VCF example to tutorial
#306
petrelharp
closed
1 year ago
0
Test CI for codecov issues
#305
benjeffery
closed
1 year ago
2
recapitating merged trees
#304
ShyamieG
closed
1 year ago
9
release tasks
#302
petrelharp
closed
11 months ago
0
updates to demo use of meanParentAge
#301
silastittes
closed
1 year ago
8
document using next_slim_id (closes #296)
#300
petrelharp
closed
1 year ago
0
use metadata vector
#299
petrelharp
closed
1 year ago
3
Fix deps for new pip
#298
benjeffery
closed
1 year ago
2
Docs build failing
#297
jeromekelleher
closed
1 year ago
0
write example using `max_slim_id( )`
#296
petrelharp
closed
1 year ago
0
edits
#295
andrewkern
closed
1 year ago
2
refactor of GH test action workflow
#294
andrewkern
closed
1 year ago
3
edits to time units docs
#293
petrelharp
closed
1 year ago
1
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