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Hi Ellen,
I can't generate mrcs from star file from cryodrgn.
I did
`(cryodrgn) [kimd999@marianas to_extract_particles]$ python ~/script/python/cryoEM/cryodrgn/utils/write_starfile.py cryosparc_P…
kimdn updated
3 years ago
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Hi,
This may not be a new issue, but I did not find a solution from search. I have 20 cpu cores, with hyperthread, the max mpi I can set should be 40, but in fact, the max mpi by Relion is 20. More…
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Hi @kenneth59715 -
is there a refresh time set somewhere for how often the task refreshes to check for output files? What is it? It seems slightly long - 5 minutes?
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Add
RELION_EXTERNAL_RECONSTRUCT_EXECUTABLE for sidesplitter
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When you start RELION in a new directory, it asks "Only run the relion GUI from your ProjectDirectory. Do you want to start a new project here [y/n]?". This presents a stumbling block for users who a…
mcahn updated
3 years ago
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I think that with out current idea of sub-Peepers, there would be quite a bit of code duplication, or weird inheritance networks.
What do you think of having a few abstract classes with topic-speci…
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This should make it possible to do polishing in Relion after cisTEM processing.
Here is an example file:
[example_permicrograph_motioncor.star.txt](https://github.com/ngrigorieff/cisTEM/files/544197…
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Usually when running in Relion 3.0, the particles extracted would result in an output file that can be read for 2D classifications. However, in Scipion, there seems to be an error in producing the out…
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I have tried latest ver3.1 version with Intel compiler and got the below error during the linking while most of the executables are created.
../../lib/librelion_lib.a(renderEER.cpp.o):(.bss+0x0): m…
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Hello!
I am at the last step of 3D refinement of my map (170k particle dataset, going to 3.7A).
At this point, I have performed Bayesian training with 40k particles (overkill) and got parameter v…