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https://mp.weixin.qq.com/s/9BOiQ-dHQQYvXpjB72_pTg
ixxmu updated
3 months ago
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Hello,
I am seeing a problem with the NormalizeData() function. I asked this question on #2803, but I think it deserves it's own issue.
It appears that NormalizeData is introducing NAs that resu…
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Hello dev team,
I would like to try out your new tool on my multiomics (scRNA&scATAC-seq) dataset. I processed it with Seurat and Signac. I dont have ArchR object. Is there a way to use Signac pro…
momur updated
7 months ago
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Hello,
I am analysing a 10x scRNA-seq dataset, and prior to cell cycle regression, clustering and DE analysis, I've run SCTransform v2 as follows:
`object
acv21 updated
3 months ago
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https://mp.weixin.qq.com/s/DL6Hv4XPmpsOnTi1KQ9WJA
ixxmu updated
4 months ago
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Dear HLCA Team,
Thank you for your excellent work! I have subset the HLCA and manually added metadata. However, I am encountering difficulties in locating the publications for study IDs Meyer_2021 …
flde updated
4 months ago
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https://mp.weixin.qq.com/s/JU1g7VOHekzv7XmncCZ62g
ixxmu updated
3 months ago
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Hello I am interested in using starfysh on a large number of visium datasets.
I have lots of scRNA seq of high resolution cell types and want to deconvulute the spatial data for the same resolution.
…
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Hi,
With great interest I've read your preprint discussing cell segmentation. I've been working on Cosmx data and have been looking for more robust transcript assignments, since the segmentation c…
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## Information
### Proposed change:
The publication "Data Type" field doesn't seem to include an up-to-date enumerated list of assay type, which seems to be:
10x Visium
Assay
Bulk DNA
Bulk Meth…