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As we are evaluating integration methods and testing subsets of datasets, it would be helpful to see the exact breakdown of ScPCA projects and how much of each disease, 10X platform, etc. are included…
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nice tool, I want to use GISTIC to do analysis based on WES(whole exam analysis), but I don't know how to prepare the markers file. appreciate your response.
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- Python 3.9.4 (and tested Python 3.6.13 )
- Conda installation on Ubuntu 20
- Basecalled using Guppy Version 4.4.0+3a263d4
- Have also tried on different dataset
- Also attempted Fast5_to_seq_sum…
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I suggest the following changes:
1.
**Problem:** One tool/image could implement multiple interfaces. By using the current list we would have to list the an image for each interface.
**Soluti…
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I would say that one thing we've learned is that combining two aspects of a val binding into one is a mistake. On one hand val is used as a definition mechanism that induces polymorphism in accordanc…
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Here
```bash
Processing antitarget: AHKYT7DSXX_S73_L001_BQSR
Keeping 0 of 40893 bins
WARNING: most bins have no or very low coverage; check that the right BED file was used
```
I don't thi…
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Hi,I'm running the module how to estimate poly(A) tail lengths from nanopore native RNA reads, and I've got the result file, but I don't understand the result file right now, I think this command line…
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Use cases:
- Storage (long-term)
- Storage (short-term)
- Streaming
- Random access
- By class
- By genomic range
Metrics:
- Compression ratio
- Compression speed
- Decompression speed…
voges updated
3 years ago
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Hi @yairf ,
I want to run this pipeline on my own data (~200 individuals including three distinct populations (from PCA), but I find it is difficult for me to prepare the input file.
First, how c…
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Hi,
Thank you for providing the detailed code for use.
I have noticed a discrepancy between the number of spots mentioned in the MERFISH tutorial and the paper. I assume these might be different d…