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### Describe the bug
After upgrading to 10.8.0 one of our tests started failing due to an issue with retrieving the customer when deleting a `TaxId` object. It looks like the tax id itself is being p…
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Hi, I can not reach some of the modules in the "inputs" module. The ones I can use are shown below. Is there another way to use the other ones?
![image](https://user-images.githubusercontent.com/…
ervau updated
2 years ago
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Hi,
Happy to finally see this tool released, thanks.
I initiated the test run on local configuration but encountered the error below with the protein conversion step
python3 Tools/software/eg…
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I am trying to get our developer account at least in a testing mode for SP-API. Our account is under review.
I was able to get to the point to create an app in draft mode but the link is not worki…
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Our framework must be able to provision every tool as either Conda package or (docker) container. At the moment, taxidtools is only available on conda-forge. This means not container is available.
…
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Dear author,
Thank you for your wonderful work! I have used your `taxa counts` script to extract true microbiome reads. As expected, I have got 2 files: `*.all.barcodes.txt` and `*.counts.txt`. Howev…
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currently slightly ahead of MIxS 6.0:
https://raw.githubusercontent.com/microbiomedata/mixs/1da849346a80b717810a02d7c8ed74a22bcd84de/model/schema/mixs.yaml
change to: https://raw.githubusercontent…
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#### Bug description
When I serialize a complex object, I'm getting an output size of around 70mb, as opposed to 180Kb using BinaryFormatter. My code is as follows:
`MessagePackSerializer.Typele…
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some taxid that have taxonomy on NCBI but taxonkit not found or not complete
taxonkit v0.15.1
taxonkit lineage 0.txt|less :
20:24:21.750 [WARN] taxid 3046382 not found
20:24:21.751 [WARN] taxid …
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Hello, I am getting this error when I try to run gffread on genemark-es output using a command like this:
gffread genemark.gtf -g test.fna -x proteins_test
The fna is a multiple sequence FASTA, an…