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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/467
This was originally proposed in #2058 however as usher tree structure change #2058 now refers to its parent called XBB.1.16.…
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XDD.1.1+G24926T(S:V1122L)
GISAID query: A23312G,G24926T,C23673T
No. of seqs: 8(UK)
First: EPI_ISL_18727830, 2023-12-22
Latest: EPI_ISL_18867300, 2024-1-25
[usher](https://nextstrain.org/fetch…
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Mutations on top of JN.1*: T9757C,C15960T, A21137G, C23673T
Gisaid Inquiry: T22896A,A22629,C23673T,T9757
First Sequence: EPI_ISL_18984051 Dublin, Ireland 2024-02-06
Second Sequence: EPI_ISL_1899414…
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From branch 3 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/601
HK.13.1+A21603G(S:Q14R)
GISAID query: A21603G, A24604G
No. of seqs: 89(Australia 4 Belgium 1 Canada 2 Denmar…
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Hi,
depending on the barcode version we use, we sometime have the following error with the `freyja demix` command;
Traceback (most recent call last):
File "/data/soft/anaconda/2021-11/envs/fr…
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This was in the original XDS proposal, and recently new seqs are added, make an issue.
XDS+C2937T,A6994G, C23601T (Orf1a:T891I, S:S680F)
GISAID query: C2937T,A6994G, C23601T
No. of seqs: 5(USA 2(…
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Mutations: JN.1.4*(JN.1*+C774T/Orf1a:T170I/NSP1 T170I)+,C21302T, C21304A, G21305A
Notes: many, or even majority of the sequences gets T18453C, T1510C, C5784T(Orf1a:T1840I), C23628T or C28201T(orf8:S1…
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Trying to update House for instance and instead the script is replacing posters on The Fall of the House of Usher. Seen this with other shows with single name title where it instead updates the wrong …
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HV.2+A25020C(S:D1153A)
GISAID query: A25020C, G14559A,C5835T
No. of seqs: 18( Australia 4 Denmark 2 UK 7 France 1 South Africa 1, plus 3 unknown country OY seqs)
15 on GISAID, 3 currently not
…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1282
JN.1+G7842A(rev), T8293C(rev), A8393G(rev), C9693T, C9866T,T11042G(rev), A11727G(rev), C23896G,A25208G
Orf1a: S2526N(rev…