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Hello Jeff,
It's really nice that you have this bit by bit encoding of sequences for DNA. You said on todo list that amino acid support will also be available. I think we need at least 8 bit right …
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### **Description**
**Sub-lineage of:** CM.2
**Earliest sequence:** 2022-11-3, Australia — EPI_ISL_15736785
**Most recent sequence:** 2022-11-12, Indonesia, Bali — EPI_ISL_15826751, EPI_ISL_1582675…
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Hi Manu.
I've been going through the README. I have an error at the `bash get_data.sh` step:
```
% Total % Received % Xferd Average Speed Time Time Time Current
…
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Hello,
I'm trying to run the following command:
`agat_sp_extract_sequences.pl -g JU2526_Y39G10AR.22.gff -f JU2526*_region.fa -p`
And it throws the following error:
```
------------- EX…
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Hello,
I met this error when I setup fDOG:
Traceback (most recent call last):
File "/public/home/HuCH/jxhuang/biosoft/python3.7/bin/fdog.setup", line 8, in
sys.exit(main())
File "/publ…
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When you're done, write your takeaways from the chapter in a comment on this issue, then remove yourself as an Assignee. Last one to do so closes the issue.
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Countries detected: New York, USA (8)
Earliest sequence: (dd-mm-yyyy) 19-10-2022
Defining mutations: S:Y144-, S:F490S, N:G30-
Most of these have a pango designation of BQ.1.18, others BQ.1.1
…
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Hello ,
I have difficulties testing your soft. When I try to start the pipeline in the singularity image:
```
singularity exec iMOKA preprocess.sh -i test
```
It returns
```
ERROR! Give a va…
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Hello, Hubert,
Thanks for developing this tool, since we have a lot samples, can we co-assemble all of them and then run this tool on the co-assembled contigs?
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Dear uorf4u users,
I have an issue with the pipeline, and I don't know why. The installation went smoothly and is indeed very easy.
However, I am trying to run the pipeline with a nucleotide fas…