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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/sthawinke/smoppix
Confirm the following by editin…
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We are seeing aggressive [strategy from IDEs](https://twitter.com/yuvipanda/status/1282301211585085445) to penetrate and/or disrupt the Jupyter Notebook UI arena, in particular JupyterLab. In parallel…
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Following up with this: https://github.com/BayraktarLab/cell2location/issues/356
Are there any improvements coming soon in cell2location to take in the full data for very large datasets? The approa…
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The current script craps out on Sandeep's example dataset
```
Traceback (most recent call last):
File "/usr/local/packages6/apps/gcc/5.2/bcbio/0.9.6a//tools/bin/bcbio_nextgen.py", line 4, in
_…
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Hello,
I am analysing a 10x scRNA-seq dataset, and prior to cell cycle regression, clustering and DE analysis, I've run SCTransform v2 as follows:
`object
acv21 updated
4 months ago
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### Report
Hi developers,
I'm trying to run `cellcharter` on my own `Stereo-Seq` spatial transcriptomics data. I have seven samples and tried to run `cellcharter` following the [Spatial clustering o…
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**Anna Greka** - Anne emailed (who works on ion channels) to see if she knows someone to talk with - Dec 15 https://mail.google.com/mail/u/0/#sent/KtbxLzfphpSXKvqjLksXdBkZFbLTKPBNnB
**Eitan Hoch** …
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Hello. I m trying to use your package for test but I cant pass to the first function. There is some name dependency on it very unclear. I tried copy the pattern of your example and I still dont know w…
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Hi developer,
I am using SortMeRNA to remove rRNA from my metatranscriptome data, and while I expected most rRNA reads to be depleted. The cleaned reads contain 25,721,937 R1 and 25,721,937 R2 reads…
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### Your idea
### EDIT
github draft for current discussion: https://github.com/PESTILLILAB/bids-specification/blob/bep038/src/atlas.md
the google doc draft (deprecated in favor of the github dr…