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[Goal 4](https://github.com/carpentries/strategic-plan#goal-4-facilitate-the-creation-and-maintenance-of-relevant-high-quality-community-curated-curricula) of our strategic plan is to "Facilitate the …
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Hello!
I just have a question for annotation of "neuron". I've known that singleR uses various reference gene expression data to annotate accurately. In my data, most of cells were annotated in "Ne…
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Hi! I got some troubles when I used bMIND. How could I solve this?
```
suppressPackageStartupMessages(library(MIND))
library(data.table)
library(tidytable)
sce % data.frame()
rownames(sce)
Ci-TJ updated
2 years ago
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Hi!
Thank you very much for generating such convenient, useful, great and open tools to combine the scRNA and bulk-seq.
When I used my data to run, I had met a question the same as you mentioned in …
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https://mp.weixin.qq.com/s/A10jVJL94BLLpE1BfKt4Tg
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/tV7SfHHf855vq8QW7ncSPg
ixxmu updated
2 years ago
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Hi,
I met a wired problem.
I have a list which contains 10 DEG(different expression genes) results of 10 different samples . However, every time I run `fgseaMultilevel` , I will stuck on the 7th sa…
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Hi team,
very nice work! I noticed that the tutorial was made to generate gene-level quantification (https://combine-lab.github.io/alevin-fry-tutorials/2021/improving-txome-specificity/). Can I use a…
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Hello Tao,
We need to upload some RNA-seq data to ENCODE (bulk, no single cell), it should be straight-forward. This is from our lab (so no worries that the same thing happens as last time with Gre…
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I have been trying to make a custom reference dateset from bulk RNA data.I couldn't make labels in the summarizedexperiment object during conversion.How can I use this dataset without labels??