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The phase attribute (GFF column 8) of a CDS is needed to correlate the coordinates of the CDS with the translation frame. We really only care about the phase of the 5'-most fragment of the CDS because…
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Both VEP and ANNOVAR mark start losses but include the information regarding changes in the coding sequence and aminoacids.
For instance, the json from VEP with variant `chr10 58224929 A G`:
```
{
…
joaoe updated
5 years ago
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## Expected Behavior
Hello,
I am trying to run PLASS on a curated set of marine viral metagenomic reads. I have two read files, and I am trying to run PLASS on them but I am getting the following e…
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Hi, I am trying to evaluate whether chromosomal inversions in a genome are under selection or no. I thought about calculating piN and piS within and outside inversions.
My target system is a hybri…
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Example: a [possible mRNA](http://rnacentral.org/rna/URS00002CC6BB/90371) (resolvase) matches Pfam PF00589.20.
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The Empirical Homoresidue model (scatter column furthest right) for high- and middle-fitness values exhibits some unexpectedly extreme dN/dS values. Check out the sampled sequences from those points …
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the `
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Example code ( fib.py )
```
def fib(n):
a, b = 0, 1
while a < n:
print(a, end=' ')
a, b = b, a+b
print()
fib(1000)
```
Attempt Commands
```
codon build fib.py
…
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목적 : 2개의 신호를 받아 특정 유전자의 발현을 유도하기 위함. violacein 생산과 연결해 사용할 예정.
조건 : 길이가 너무 길지 않아야 하고, 성공한 사례가 있는 파츠 중심으로 조사.
*T7 RNA polymerase gene with two internal amber codons (T7ptag) & amber suppressor gene…
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Issue linked to #76 and testing the `riboviz.tools.upgrade_config_file` tool from riboviz 2.1.
I used the command `python -m riboviz.tools.upgrade_config_file -i ../example-datasets/fungi/saccharom…