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Thanks to the helpful tutorial of MCScan, I was able to create a dot plot (below). However, the grid looks somewhat strange. Narrow grids are incorrectly inserted on the right-hand side of C3, C7, C10…
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https://mp.weixin.qq.com/s/OmZ7jpuRJiW8Vp4zWqNWRQ
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https://mp.weixin.qq.com/s/YvhXhEV4DXRRU872XmI4Ag
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Should cells with low counts/ high-Mitochondria and doublets be discarded prior to entering the data to cell typist? or can one remove them thereafter?
Thanks!
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I've read you paper and wanted to try transmorph myself, but I ran into some problems...
Either `from transmorph import datasets` or `from transmorph.datasets import load_chen_10x` raise TypeError...…
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Along with #161, another way to help with scaling would be to allow `stackratio` and `dotsize` to be automatically selected when a `binwidth` constraint is hit (definitely a min, and maybe also a max?…
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Hi, Dr. Lovell. I ran analysis and I got this error:
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Flagging over-dispered OGs
...amphioxus: 2048 genes in 99 OGs hit > 8 unique places ***
...chicken : 246 genes in 8 OG…
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This includes changing the visualization type or changing the number of concepts shown in each plot. Could have a redraw button.
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Add visuals for the statistical data
- [x] Histogram (Generated)
- [x] Histogram (Used in database)
- [x] Dotplot (Generated)
- [x] Dotplot (Used in database)
- [x] Boxplot (Generated)
- [x] Box…
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**Hi, teacher. I have encountered problem similar to the above, and I also upgraded JCVI,latex and matplotlib
then I run "tlmgr install fontspec".There are no errors reported,
It reported “tlmgr ins…