Teichlab celltypist issues

Teichlab / celltypist

A tool for semi-automatic cell type classification

https://www.celltypist.org/

MIT License

253 stars 40 forks source link

issues

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sklearn version log/log_loss

#124 JAshcroft36 opened 1 day ago
0
Any reason why CellTypist is not part of scverse ecosystem?

#123 Rafael-Silva-Oliveira opened 3 days ago
0
Issue with Offline Label Transfer

#122 macelik opened 1 month ago
2
Organ atlas Citing CellTypist. Automatic cell type harmonization and integr…

#121 Xyihang closed 1 month ago
1
Issue accessing www.celltypist.org - 502 Bad Gateway

#120 lucygarner closed 1 month ago
5
celltypist before/after batch correction

#119 malonzm1 opened 2 months ago
6
Very low confidence score even though labels are correct

#118 mousepixels closed 2 months ago
2
Can not download the model

#117 Knight1995 closed 2 months ago
2
www.celltypist.org is down, cannot download models

#116 sztankatt closed 2 months ago
3
Conflict with variable genes and model training

#115 mousepixels closed 2 months ago
1
Question about over_clustering and conf_score?

#114 sranbhor opened 3 months ago
1
Add rsc support

#113 Intron7 closed 2 months ago
3
multiple models

#112 anke-king opened 3 months ago
3
Can not detect a neighborhood graph, will construct one before the over-clustering

#111 Sirin24 opened 3 months ago
1
Feature: Support Rapids-singlecell

#110 Intron7 closed 1 month ago
1
is it available to generate model.pkl file from a marker gene list

#109 fnhe closed 4 months ago
1
ValueError in celltypist.annotate

#108 katecycho closed 2 months ago
3
Running the CellTypist training function celltypist.train on a subset of genes

#107 dkapadia612 opened 4 months ago
1
Running celltypist with concatenated dataset

#106 malonzm1 opened 5 months ago
3
Cluster-level label prediction

#105 pwwang closed 5 months ago
1
Immune_All_Low - model training question

#104 NikicaJEa opened 5 months ago
4
CellTypist_Immune_Reference_v2 question

#103 NikicaJEa closed 5 months ago
2
the question about conf_score

#102 Xyihang closed 2 months ago
3
codes for harmonizing the cell labels

#101 YOU-k closed 5 months ago
2
" have completed preprocessing and cell clustering. "

#100 Xyihang closed 4 months ago
2
Feature Request: Store freqs in annotation when majority_vote set to True

#99 eroell closed 7 months ago
2
unable to download models

#98 mxiang1 opened 7 months ago
3
Use of metacells?

#97 andreahanel closed 3 months ago
4
Running `celltypist.annotate` with `min_prop` can't create "Heterogeneous" category

#96 DanScarc closed 7 months ago
2
Unable to allocate xxx GiB for an array with shape and data type float64

#95 zqxiao2001 closed 4 months ago
2
Using model trained by scRNA-seq datasets to predict Spatial transcriptmoic dataset

#94 SNOL2 closed 8 months ago
2
Update plot.py

#93 milescsmith opened 8 months ago
3
Issues running with conda

#92 edridgedsouza closed 8 months ago
3
confidence score definition

#91 mjstrumillo closed 7 months ago
2
Request: allow to specify AnnData layer to use

#90 pcm32 opened 9 months ago
1
Potentially misleading error when counts are not in expected range

#89 padix-key closed 8 months ago
3
Harmonize and Integrate

#88 YawnC closed 8 months ago
1
Allow to specify the AnnData var field that has the gene_symbols instead of only relying on var_names

#87 pcm32 closed 9 months ago
2
Error running celltypist

#86 malonzm1 closed 7 months ago
10
Preparing custom reference files

#85 Tripfantasy closed 9 months ago
2
KeyError when insert conf of majority_voting under `porb match` mode

#84 songmingl closed 9 months ago
2
Invalid expression matrix in `.X`, expect log1p normalized expression to 10000 counts per cell; will try the `.raw` attribute

#83 hyjforesight closed 9 months ago
10
Error happened in models

#82 anyang-kevin opened 9 months ago
8
Error in downloading models

#81 Tailion9 closed 10 months ago
0
cuml training LogisticRegression.

#80 canergen closed 10 months ago
0
sankeyplot fails in V.1.5.3

#79 rgranit closed 11 months ago
4
Can not import celltypist

#78 Jiam1ng closed 11 months ago
1
Add yaml file

#77 ChuanXu1 closed 11 months ago
0
certificate verification failed when trying to load models

#76 maximillo closed 11 months ago
2
SGDClassifier / InvalidParameterError: The 'loss' parameter of SGDClassifier must be a str

#75 bbimber closed 11 months ago
2