Teichlab celltypist issues

Teichlab / celltypist

A tool for semi-automatic cell type classification

https://www.celltypist.org/

MIT License

300 stars 46 forks source link

issues

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Custom Model

#142 nemeskolos opened 8 hours ago
0
Adding use_GPU option in command line usage

#141 Dkaaaaa opened 4 days ago
0
module 'celltypist' has no attribute 'extract_top_markers'

#140 VittoriaDBocchi opened 1 week ago
0
why do fibroblast,endothelial,epithelial exit in immune_ALL_High_model?

#139 echovv opened 1 week ago
0
Why we need to ensure the data format is adjusted with 10,000 for normalization correctness?

#138 HelloWorldLTY opened 1 month ago
1
Cluster level annotation question

#137 liuyang2006 opened 1 month ago
1
Remove majority voting

#136 Mena-SA-Kamel closed 1 month ago
0
Celltypist's MIT license and GPL dependency leidenalg

#135 PertuyF opened 1 month ago
0
cluster free annotation

#134 Flu09 opened 1 month ago
1
Failure to install

#133 tricityandrew opened 2 months ago
1
SCT Object Compatibility with celltypist

#132 katkatrach opened 2 months ago
2
AnnData Backed Mode Support

#131 kennypavan opened 2 months ago
2
The full names of cell types

#130 BioAmelie closed 2 months ago
0
How can I subset the model to a select few cell types/clusters before training the model?

#129 yojetsharma opened 3 months ago
6
downsampling before training the model

#128 Flu09 opened 3 months ago
1
Is celltypist suitable for predicting mouse immune types？

#127 ttt-404 opened 3 months ago
1
Cell Typist Providing different results between iterations

#126 ManuelSokolov opened 3 months ago
6
Cellxgene links offline

#125 canergen opened 4 months ago
1
sklearn version log/log_loss

#124 JAshcroft36 opened 4 months ago
1
Any reason why CellTypist is not part of scverse ecosystem?

#123 Rafael-Silva-Oliveira closed 4 months ago
2
Issue with Offline Label Transfer

#122 macelik opened 5 months ago
2
Organ atlas Citing CellTypist. Automatic cell type harmonization and integr…

#121 noob000007 closed 5 months ago
1
Issue accessing www.celltypist.org - 502 Bad Gateway

#120 lucygarner closed 6 months ago
5
celltypist before/after batch correction

#119 malonzm1 opened 6 months ago
10
Very low confidence score even though labels are correct

#118 mousepixels closed 7 months ago
2
Can not download the model

#117 Knight1995 closed 7 months ago
2
www.celltypist.org is down, cannot download models

#116 sztankatt closed 7 months ago
3
Conflict with variable genes and model training

#115 mousepixels closed 7 months ago
1
Question about over_clustering and conf_score?

#114 sranbhor opened 7 months ago
1
Add rsc support

#113 Intron7 closed 7 months ago
3
multiple models

#112 anke-king opened 8 months ago
7
Can not detect a neighborhood graph, will construct one before the over-clustering

#111 Sirin24 opened 8 months ago
1
Feature: Support Rapids-singlecell

#110 Intron7 closed 6 months ago
1
is it available to generate model.pkl file from a marker gene list

#109 fnhe closed 8 months ago
1
ValueError in celltypist.annotate

#108 katecycho closed 7 months ago
3
Running the CellTypist training function celltypist.train on a subset of genes

#107 dkapadia612 opened 9 months ago
1
Running celltypist with concatenated dataset

#106 malonzm1 closed 3 months ago
4
Cluster-level label prediction

#105 pwwang closed 10 months ago
1
Immune_All_Low - model training question

#104 NikicaJEa opened 10 months ago
4
CellTypist_Immune_Reference_v2 question

#103 NikicaJEa closed 10 months ago
2
the question about conf_score

#102 noob000007 closed 7 months ago
3
codes for harmonizing the cell labels

#101 YOU-k closed 10 months ago
2
" have completed preprocessing and cell clustering. "

#100 noob000007 closed 9 months ago
2
Feature Request: Store freqs in annotation when majority_vote set to True

#99 eroell closed 11 months ago
2
unable to download models

#98 mxiang1 opened 1 year ago
4
Use of metacells?

#97 andreahanel closed 8 months ago
4
Running `celltypist.annotate` with `min_prop` can't create "Heterogeneous" category

#96 DanScarc closed 11 months ago
2
Unable to allocate xxx GiB for an array with shape and data type float64

#95 zqxiao2001 closed 9 months ago
2
Using model trained by scRNA-seq datasets to predict Spatial transcriptmoic dataset

#94 SNOL2 closed 1 year ago
2
Update plot.py

#93 milescsmith opened 1 year ago
3