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Teichlab
/
celltypist
A tool for semi-automatic cell type classification
https://www.celltypist.org/
MIT License
254
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40
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impatiently waiting for V2 (but very excited)
#74
mjstrumillo
closed
11 months ago
2
`ImportError` with `sklearn==1.3.0`
#73
sunnyosun
closed
1 year ago
3
T helper cells
#72
SirKuikka
closed
9 months ago
1
reannotation returns many "UNASSIGNED" cells
#71
YawnC
closed
1 year ago
2
fix download_models when the server is unavailable
#70
prete
closed
1 year ago
0
Temporary patch anndata uns.log1p serialization issue
#69
prete
closed
1 year ago
0
Issue with downloading models: 503 Server Error
#68
jkbenotmane
closed
1 year ago
4
download_models corrupts models.json when the server is unavailable
#67
itamarb-cgen
closed
11 months ago
3
503 error in models.download_models
#66
Tianhao-LiPKUHSC
closed
1 year ago
2
type error when the input is Anndata
#65
jjxia955
closed
9 months ago
8
Harmonizing datasets with missing annotations
#64
pakiessling
closed
1 year ago
1
Training data for Immune_All_Low
#63
MichaelLauber
closed
9 months ago
2
Input with 10x matrix containing Antibody Capture
#62
ollieeknight
closed
1 year ago
4
Contro
#61
ChuanXu1
closed
1 year ago
0
Loading custom model
#60
auesro
closed
2 months ago
4
NK cells vs CD16+/ CD16- cells
#59
kate-simonova
closed
1 year ago
3
TypeError: reorder_categories() got an unexpected keyword argument 'inplace'
#58
hyjforesight
closed
1 year ago
2
Cell Encyclopedia Link Broken
#57
ChaseTaylor939
opened
1 year ago
1
conda version is out of date.
#56
bioworker
closed
6 months ago
5
Only 9 features were used for prediction
#55
B-WingBreaker
closed
1 year ago
8
Adding a version argument to download_models
#54
E-R
opened
1 year ago
1
Adult_Mouse_Gut cell types
#53
ejc043
closed
1 year ago
5
Getting error when running predictions follow tutorial
#52
WhaleGe
closed
1 year ago
4
Getting error when running predictions
#51
dadarenedo
closed
1 year ago
8
TypeError: np.matrix is not supported. Please convert to a numpy array with np.asarray?
#50
bbimber
closed
1 year ago
7
Train Custom Model on scATAC-seq data?
#49
jacklynnewsome
closed
1 year ago
2
Training new model gives ValueError
#48
AmichayAfriat
closed
1 year ago
1
predictions.to_adata() error
#47
sailseem
closed
1 year ago
2
Can I use log2(TPM) normalized data as input instead log1p w/ 10K scaling factor?
#46
antonioggsousa
closed
1 year ago
4
Genes driving the prediction
#45
cdiaz45
closed
1 year ago
2
predictions = celltypist.annotate "ValueError:"
#44
DRSEI
closed
1 year ago
2
Can celltypist handle doublets and low quality cells?
#43
rgranit
closed
1 year ago
2
'Naive' cell type in 'Adult_Mouse_Gut' model
#42
rgranit
closed
1 year ago
2
undetermined cells
#41
pranithavangala
closed
1 year ago
7
Guidance for using Nanostring CosMx RNA input
#40
markdane
closed
1 year ago
2
raw training dataset
#39
mjstrumillo
closed
1 year ago
14
Can we extract the performance metrics from a customized model?
#38
lxhuang7
closed
1 year ago
2
Details to be added about the available model
#37
saeedfc
closed
1 year ago
3
Error with model download
#36
akk01
closed
1 year ago
6
Are the confidence scores of celltype predicted by different reference models comparable?
#35
hxpGit512
closed
1 year ago
4
Can't run cell typist with a my own model
#34
anemartinezlarrinaga2898
closed
1 year ago
6
Plot a celltypist.dotplot to visualise celltypist's classification using a probability threshold
#33
sanchezy
closed
1 year ago
3
How to update the model
#32
hxpGit512
closed
1 year ago
3
CellTypist with batch correction
#31
LeonHafner
closed
1 year ago
1
Create CITATION.cff
#30
prete
closed
2 years ago
0
RAM usage by converting from sparse to dense
#29
chbeltz
closed
2 years ago
8
model download - requests not working
#28
wallet-maker
closed
1 year ago
1
Add container section to README
#27
prete
closed
2 years ago
0
Gene names VS gene IDs in precomputed models
#26
emdann
closed
2 years ago
3
Add Dockerfile
#25
prete
closed
2 years ago
0
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