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MonashProteomics
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FragPipe-Analyst
GNU General Public License v3.0
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Paired Statistical Analysis
#96
edunivers
opened
1 month ago
4
PTM differential statistics: read combined_site tables?
#95
patrick-willems
closed
1 month ago
1
Related issues of missing values and row-order when merging (LFQ and FragPipe Analyst, DEP, DEP2)?
#94
1Moe
closed
3 months ago
2
Unable to generate results when analyzing DIA precursor file
#93
YeelonYeoh
closed
2 months ago
3
Volcano plots ERROR when using DIA-NN data and multiple experimental conditions (4)
#92
iolanda-vendrell
closed
4 months ago
2
Update Dockerfile.local
#91
Sanpme66
closed
4 months ago
3
How to analyse phosphoproteome data acquired using DDA with reference to the proteome data acquired using DIA?
#90
YeelonYeoh
closed
4 months ago
2
Output Volcano Plots for all contrast pairs in PDF report
#89
jmvarberg
closed
2 weeks ago
2
Could not run DDA data on Fragpipe-Analyst
#88
YeelonYeoh
closed
5 months ago
8
Not able to run Shiny server
#87
rolivella
closed
7 months ago
3
added new features
#86
Hailey-Z
closed
9 months ago
3
Can FragPipe Analyst be used for viewing merged GeLCMS DDA files for LFQ of proteins/peptides?
#85
lired01
closed
9 months ago
4
Feature plot doen't seem when using my dataset
#84
Hayoung-hiro
closed
10 months ago
3
FragPipe Analyst not working
#83
pankajdwid
closed
11 months ago
2
Filtering the proteinIDs and adjusted p-value calculation
#82
pejota66
closed
11 months ago
4
PCA plot and sample correlation error
#81
alyssaxin
closed
1 year ago
3
fix bug in download table on absence/presence page
#80
Hailey-Z
closed
1 year ago
0
Help with FragPipe-Analyst error
#79
alyssaxin
closed
1 year ago
2
set seed for sampling in perseus imputation (mannual_impute)
#78
ginnyintifa
closed
1 year ago
0
added downloadable RData files
#77
Hailey-Z
closed
1 year ago
2
set seed for perseus style imputation
#76
ginnyintifa
closed
1 year ago
1
Don't rely on significant column when plotting volcano plot
#75
hsiaoyi0504
closed
1 year ago
0
fix an issue that samples are not fully labeled by sample_names in the PCA plot
#74
hsiaoyi0504
closed
1 year ago
0
Experiment annotation for gas-phase fractionated samples?
#73
jossmi
closed
1 year ago
1
Modified dockerfile
#72
Hailey-Z
closed
1 year ago
0
added downloadable rds option
#71
Hailey-Z
closed
1 year ago
0
Issues running locally with docker
#70
fabianegli
closed
1 year ago
2
added to google analytics
#69
Hailey-Z
closed
1 year ago
0
use plotly to plot box plot and violin plot
#68
hsiaoyi0504
closed
1 year ago
0
new experiment_annotation format (use sample_name)
#67
hsiaoyi0504
closed
1 year ago
0
Add plex set info into missing value heatmap for TMT
#66
hsiaoyi0504
closed
1 year ago
0
DIA annotation file format update
#65
hsiaoyi0504
closed
1 year ago
0
Bug fix on changing experiment type during analysis
#64
Hailey-Z
closed
1 year ago
0
Volcano plot visualization revisit
#63
hsiaoyi0504
closed
1 year ago
2
Detect unlabeled columns in TMT
#62
hsiaoyi0504
closed
1 year ago
0
Layout and plotting issue
#61
hsiaoyi0504
closed
1 year ago
1
add TMT tutorial verison 1
#60
ginnyintifa
closed
1 year ago
0
Use different log2FC threshold for different experimental platform
#59
hsiaoyi0504
closed
1 year ago
2
Capture some keywords in condition column and make it fixed at the right or left in DE
#58
hsiaoyi0504
closed
1 year ago
1
Enrichment result will get updated automatically without pressing the Run Enrichment button again
#57
hsiaoyi0504
closed
1 year ago
1
violin plot and box plot could be more interactive
#56
hsiaoyi0504
closed
1 year ago
1
Enrichment result looks blurry
#55
hsiaoyi0504
opened
1 year ago
0
updated start analysis action
#54
Hailey-Z
closed
1 year ago
1
median CV% is NA
#53
hsiaoyi0504
closed
1 year ago
0
Add an option to switch the range of CV plot
#52
hsiaoyi0504
closed
1 year ago
1
volcano plot highlighting genes twice if the gene is selected in the table.
#51
ginnyintifa
opened
1 year ago
0
CV should be computed using untrasformed data
#50
hsiaoyi0504
closed
1 year ago
1
KEGG result for ccRCC discovery cohort is not ideal
#49
hsiaoyi0504
closed
1 year ago
2
MLE imputation gets weird result on TMT dataset
#48
hsiaoyi0504
closed
1 year ago
1
k-means clustering were not performed if no imputation used
#47
hsiaoyi0504
closed
1 year ago
1
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