-
EDITED
The proposal was made to obsolete GO:0044105 L-xylulose reductase (NAD+) activity - but evidence for this activity was found and a RHEA reaction was created.
Original ticket:
----
…
-
**Description of the task:**
We are given a list of the Tier 1 metadata that are gonna be used in the integration. We are asked to map those metadata to fields in our metadata schema, and provide e…
-
Hello,
We'd like to remove the relation 'regulates_transcription_of' from GO_REL. The relation can be replaced by 'has_input'. The annotations are here:
https://docs.google.com/spreadsheets/d/1…
-
### Description of the bug
When running the pipeline with gencode gtf, it seems to have the Command error:
.command.sh: line 3: gtf2featureAnnotation.R: command not found error
### Command used a…
-
_WARNING: long post below. I'm hoping to help us build a shared conceptual framework to guide ongoing API design, and given the underlying complexity and the number of different priors, don't know how…
-
Hi,
I'm running into issues with the format of the [genes.gtf ](s3://ngi-igenomes/igenomes/Homo_sapiens/NCBI/GRCh38/Annotation/Genes/)which is referenced in v1.4.2 [/conf/igenomes.config](https://gi…
tweep updated
8 months ago
-
Consider an IEP annotation to 'cellular response to glucose stimulus'
This will yield an inference to locatization to 'cell'. We can argue about the utility of this, but it's logically and biological…
-
I’m Iva (@ivagljiva), writing on behalf of myself and my colleague Kat (@Kekananen). We were looking into this pipeline for unrelated reasons when we stumbled across a couple of bugs. Unfortunately, a…
-
### Background
Technological advancements in the determination of complete genomic sequences and their annotation, and the well-explored biochemistry of metabolic transformations have facilitated the…
-
SOD2 was [ENSG00000112096](https://jul2022.archive.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112096;r=6:159669069-159762529) in v38 and is [ENSG00000291237](https://useast.ensembl.org/H…