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https://bioconda.github.io/recipes/t_coffee/README.html
https://bioconda.github.io/recipes/t-coffee/README.html
The first one ("t_coffee") is older, but doesn't compile on macOS and doesn't have…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jsun/CircSeqAlignTk
Confirm the following by edit…
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`for f in assemblies/*.fasta
do
makeblastdb -in $f -dbtype nucl -parse_seqids
done
ls assemblies/*.fasta | rev | cut -f1 -d/ | rev > list_of_files_to_seach_against.txt
../blast_wrapper.sh .…
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----
## Bug Report
Hi GATK team,
I've just been running some variant calling benchmarks on a set of bacterial isolates and I was trying to understand how GATK HaplotypeCaller chooses which re…
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Trying to use Ultra v0.3 to align some direct RNA sequencing to a reference genome when it throws the error below:
Filtering reads aligned to unindexed regions with minimap2
Done filtering. Reads…
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Hi!
I don't know why when I run the HiC-pro, it comes error
$ ./HiC-Pro -i ~/analysis/trimmomatic_data/2X4X/2X2/ -o ./test -c ~/analysis/hicpro_data/config_2X2.txt
/tmp/hicmk.3522:1: *** missing …
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I thought I knew JSON-LD.
But then I saw this DOAP example at https://github.com/common-workflow-language/common-workflow-language/wiki/Related-ontologies. Compare to an actual Turtle of a Debian p…
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I have checked the following places for your error:
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core/sarek pipeline documentation](https://nf-co.re/n…
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iqtree2 fails because of a wrong header for the outgroup.
outgroup="-o NC_063383"
cat nextalign.aligned.fasta | sed 's/NC_063383.*/NC_063383/g' > nextalign.aligned.fasta.renamed
nextali…
DrB-S updated
2 years ago
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### Description of the bug
Pipeline fails immediately with the error in subject line.
This is my first attempt at using Nextflow and the nf-core RNAseq pipeline, so I'm not even sure where to st…
kubu4 updated
2 years ago