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I ran the earlGrey pipeline version 4.0.8 (using RM4.1.5) on a genome and now I ran earlGrey 4.2.4 (with RM4.1.6) on the same genome. The resulting plots look very different and I was wondering why th…
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hello,
I got an error when I used mathphaser:
/share/home/yzwl_hanxs/anaconda3/envs/danbeixing/bin/meth_phaser_parallel:235: FutureWarning: When grouping with a length-1 list-like, you will need to …
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**Snakemake version**
> 5.8.1
**NOTE:** I will go over why I'm not using the latest version in the **additional context** section
**Wrapper version**
> 0.64.0/bio/fastqc
**Describe th…
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I'm currently trying to run `hisat_genotype` in a `docker` container due to #66
Below is my `Dockerfile`
```
FROM biocontainers/biocontainers:vdebian-buster-backports_cv1
USER root
ENV DE…
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We've been using Clay v1 embeddings directly, and via the Build/Explore apps. We've also done several types of partial benchmarking, so we are starting to feel comfortable with the quality of the mode…
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**Describe the bug**
A clear and concise description of what the bug is.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See er…
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Hi, I can not reach some of the modules in the "inputs" module. The ones I can use are shown below. Is there another way to use the other ones?
![image](https://user-images.githubusercontent.com/…
ervau updated
2 years ago
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Hi:
I am trying to analyze eCLIP-seq data and my PI advised me to call peaks using MACS2. I read the manual on how macs2 can be used for peak calling when doing chip-seq. It looks easy to follow: I…
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Greetings,
(Googling around wasn't too helpful, so I hope posting here is appropriate).
I'm trying to run a "simple" MACS2 job (MACS2 2.1.0 20150420 rc):
```
macs2 callpeak \
--name 'HA vs. W…
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Dear Shorah developers,
First, I would like to say that you have a great program that is very useful for local haplotype reconstruction, especially if we try to genotype across a larger region whil…