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See Galaxy bug report: https://test.galaxyproject.org/dataset/errors?id=e0efdf8bfb70378a
cmd line for the load includes the --annotation-dir (should be ok before the 'load' command?):
```
gemini --a…
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Hi,
I am running PRSice 2.2.6. on the imputed data (bgen).
I have a problem with PRSice 2.2.6 crashing when the program reaches the part " clumping 100%, then core damped".
To solve this pot…
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Hello,
I am trying to carry out Mendelian randomisation using 1 SNP.
How would I extract a single SNP from my own summary statistics outcome data (i.e. data which is not found online). The exposur…
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# Topic: Variant Analysis, Title: Exome sequencing data analysis
**[Tutorial Link](http://galaxyproject.github.io/training-material/topics/variant-analysis/tutorials/exome-seq/tutorial.html)**
**Co…
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**Describe the bug**
I am simulating a relatively larger genomic dataset for a follow-up GWAS analysis. While I was able to run an entire simulation with a smaller population when I try to simulate …
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> install.packages("rMVP")
Installing package into ‘C:/Users/user/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
package ‘rMVP’ is not available (for R version 3.5.3)
> # Or the the devel…
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Hello, Very interesting algorithm to perform the colocalization analysis. I try to run this but have some error in my dataset (attached). Can you help to check? Thanks.
> load('test.RData')
> r…
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@YiLiu6240 I'm having trouble running render_gwas_report.R using Docker:
command using commit 177aa4b3170d984c704384cc47309162edc4fbe9:
```
docker run \
--rm \
-v ${MountDir}:${MountDir} \
-…
mcgml updated
5 years ago
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Hi bvilhjal
I am trying to run ldpred twice, with the same reference and validation panel, but with different summary statistics based on different populations.
For one set of summary statistic…
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Hi Boxiang,
I'm testing the `locuscomparer` package on my Mac.
The environment is R 3.6 and the sample data works very well.
But when I load my own datasets, it always shows the following msg aft…