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Thank you for creating an excellent reference dataset and releasing clear tutorials. While the tutorials are great to follow, I think many individuals will simply want the actual data downloaded onto …
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Hi,
I'm using HPC clusters that are incompatible with internet so I'd like to avoid using Conda when using @sk_import in ScikitLearn.jl. However, all my trials have been unsuccessful so far.
F…
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I downloaded the Listeria Monocytogenes scheme from ChewieNS and used it successfully to allele call public data ~52K genomes split into batches of 5K. All of these allele calling jobs finished and p…
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Hi there,
Good job for this awesome pipeline! I'd really like to try it, but I'm stuck on installing the databases.
I'm working on a cluster and tried:
>hecatomb install --profile slurm
>heca…
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Hi all,
pyiron is really a nice work!! : )
some question for it:
i dont want to submit **too much** lammps jobs in a HPC in a time.
For example : if i have 100 jobs, there will be 100 slurm …
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When I get an info about a job, for example mem_used, I find that the plot was showed by node-level mem_used info, not the job-level. Then I check the demo, all plots of job 1334982 have the "node" si…
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We have limited VCPUs resource allocated. When we create clusters, even if we do not use it, we are consuming the resource.
As long as we are using 'non elastic' Kubernets cluster, we need to manu…
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I'm getting quite frequent and random nrn_timeout in my simulations. This is for an M1 model with 10k multi-compartment multi-channel cells, 7k VecStims, 30M synapses, 5-sec simulations, running on 12…
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Hi,
I have problems installing the latest version of ShortStack.
conda install -n shortstack shortstack
installs version 3.8.5
When I try to install with
conda install -n shortstack shortstac…
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In the ASGS Weekly Call meeting notes from 20200618, the options for automated command line allocation and disk quota checks on the hpc clusters were described. Is it possible to integrate this into A…