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Before analyzing single cell data, the following steps have to be performed:
- filtering (cells with low or exorbitantly high number of counts or genes)
- removal of cell cycle effects
- (doubl…
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There are 3 or 4 versions -- get down to one set.
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Sorry for going back and forth between theories but I had some general questions:
1. The statistical property for `inter-chromosomal/ long range intra-chromosomal` contacts- explained is definitely…
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Since the update to 3.0.0, `mice()` no longer supports older argument names. This causes problems with previously published examples that used earlier versions of `mice` (< 3.0.0). For example, `mice(…
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We have some requests on how to extract the following information as np.array type from the model such as:
+ A latent space for a given set of cells
+ Imputed values on a given set of cells
It is…
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Jira issue originally created by user @ymarcon:
Currently, the derivation script is evaluated for each entity, inducing a scripting engine overhead that affects the performances (in addition to limit…
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Let's add a Jupyter notebook to the `doc/examples` directory that shows how to generate the figures (and one table) from the original scVI paper. It isn't necessary to reconstruct the parts of the fig…
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Please have a look at this link
https://github.com/Teichlab/bbknn/issues/3#issuecomment-427759950
After getting scanorama_corrected datasets, does it need to do normalization, logarithmize and sca…
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https://linkinghub.elsevier.com/retrieve/pii/S0092867418307244
Look at other imputation methods, tho.
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When running `examples/basics/basic_classification.py` on a CPU, I receive the following output and error:
```
11:11:18 WORKER: start listening for jobs
11:11:18 [AutoNet] Start bohb
11:11:18 DI…