tanlongzhi dip-c issues

tanlongzhi / dip-c

Tools to analyze Dip-C (or other 3C/Hi-C) data

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issues

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merge .allValidPairs of the same celltype cells to reconstructe 3D model

#64 zcq23 opened 2 days ago
0
On the issue of duplicated chromosomes

#63 HanwenZhu98 opened 9 months ago
0
Error: generate the 3D structure

#62 XiongGZ opened 10 months ago
4
Haploid data

#61 XiongGZ opened 11 months ago
0
Can not colored

#60 XiongGZ closed 11 months ago
4
added code and links to 2023 science paper

#59 jshi7 closed 11 months ago
0
Calculating radius of a given nucleus

#58 carliemcgrath opened 1 year ago
0
Discrepancy in txt file names between 2018 and 2019 publications

#57 carliemcgrath closed 1 year ago
0
Generating 3D proximity map and visualization of TAD

#56 Xuyuch opened 1 year ago
0
'str' error when convert 3dg file to cif file

#55 Xuyuch closed 1 year ago
1
remove repetitive (contact-less) regions encountered a problem

#54 LHXqwq opened 1 year ago
2
distances to the nuclear center

#53 sunlightwang opened 1 year ago
0
color: added --G-* options

#52 tarak77 opened 1 year ago
0
color: added --s-exc option

#51 tarak77 closed 2 years ago
0
color: added --c-hom option

#50 tarak77 closed 2 years ago
1
How to install Dip-C?

#49 baliaga31 closed 10 months ago
0
added haplotype separation score

#48 tarak77 closed 2 years ago
1
Quality control of DipC data

#47 AIBio opened 2 years ago
0
How to generate cpg.1m.txt file for GRCh38?

#46 AIBio closed 2 years ago
2
The coordinate system of SNP file.

#45 AIBio closed 2 years ago
2
Question about SNP file

#44 AIBio closed 2 years ago
2
How to remove the abnomal copy-number (CN) gains or losses regions

#43 pangxueyu233 opened 2 years ago
4
About single cell chromatin A/B compartment clustering

#42 AmyTanJ closed 2 years ago
4
Is variant masked genome ref required for the alignment ?

#41 yxian9 closed 3 years ago
2
hickit: invalid option -- 'M'

#40 conchoecia closed 4 years ago
2
SNP

#39 weilai-weilai1 closed 4 years ago
2
Using align.py

#38 tarak77 closed 4 years ago
2
Strange Segment Format

#37 YuxuanZheng94 closed 4 years ago
2
In the old pipeline, Is it possible to generate models at a higher resolution?

#36 tarak77 closed 4 years ago
4
change resolution from .3dg file

#35 lidaof closed 4 years ago
4
convert .3dg to pdb format?

#34 lidaof closed 4 years ago
6
Generating pile up of inter chromosomal contacts

#33 tarak77 closed 5 years ago
6
a doubt in nuc_dynamics.py file

#32 tarak77 closed 5 years ago
4
How to pileup interchromosomal contact maps?

#31 tarak77 closed 5 years ago
2
Minor modification about nuc_dynamic

#30 YuxuanZheng94 closed 5 years ago
0
Key difference between single cell hic and normal population hic in terms of building 3D model

#29 kainblue closed 5 years ago
2
Error when modelling unfertilized egg cell

#28 tarak77 closed 5 years ago
10
SNP information for reproducing the analysis

#27 kainblue closed 5 years ago
2
Try to understand the analysis

#26 kainblue closed 5 years ago
3
Regarding chromatin compartments

#25 tarak77 closed 5 years ago
7
Help with generating fig 4A,C from dip-c paper

#24 tarak77 closed 5 years ago
31
Similar to issue #12

#23 tarak77 closed 5 years ago
14
Just thinking out loud

#22 tarak77 closed 5 years ago
1
Error in dip-c seg and intermediate files

#21 bioyuyang opened 5 years ago
5
Highlighting centromeres in the model?

#20 tarak77 closed 5 years ago
12
Error with dip-c color

#19 bioyuyang closed 5 years ago
3
Regarding exp.py

#18 tarak77 closed 5 years ago
6
Dip-c vs hickit for preprocessing

#17 tarak77 opened 5 years ago
33
Some general questions...

#16 tarak77 closed 5 years ago
11
pd: pairwise distance from 3dg

#15 tanlongzhi closed 5 years ago
0