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Hi,
I cloned the repository and hopefully satisfied all the software installation requirements.
I ran ```./install/validate.py config/bulk-config.json --ignore-input-output --software ``` without an…
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**Submitting author:** @johncwok (Corentin Nelias)
**Repository:** https://github.com/johncwok/CategoricalTimeSeries.jl
**Version:** 1.0.0
**Editor:** @jbytecode
**Reviewers:** @bkamins, @felixcremer…
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Thank you for providing this outstanding repeat expansion detection tool.
I got my 4 samples(FastQ) processed, and 4 per_read.txt.gz files are ready.
The next step should be post-processing.…
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https://mp.weixin.qq.com/s/BqpzGZQsquwM7T73HEXDOg
ixxmu updated
3 years ago
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**Describe the bug**
When running gimme motifs with the following parameters:
gimme motifs -s 0 -f 0.5 -g mm10 --denovo Alluvial_open_GM.5.0.Forkhead.0008.bed Alluvial_open_GM.5.0.Forkhead.0008_gimm…
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Hello -
I am new to bioinformatics and am going through the SCENIC tutorial. I am having trouble loading the databases. Here is my R code:
```
dbFiles
AAA-3 updated
3 years ago
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**Describe the bug**
Gimme motifs is not apparently using the -f value provided.
**To Reproduce**
I've run gimme motifs commnad providing input, background and genome in fasta format with the -…
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Hi @rcorces ,
I have a question about using ArchR outputs for downstream analysis. I would like to detect potential motif binding sites within peaks. Obviously, I can use bedtools to intersect moti…
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PLEASE FILL OUT THE RELEVANT INFORMATION AND DELETE THE UNUSED PORTIONS OF THIS ISSUE TEMPLATE.
**Attach your log file**
[ArchR-plotEnrichHeatmap-7fc6549babd-Date-2020-12-17_Time-11-59-13.log](htt…
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Hello,
I have been getting a great deal of use out of your tools lately, thanks as always for the excellent work.
I am wondering if the species (9606) in the mouse brain vignette is actually human…