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@Hego-CCTB Could you remind me why those options are set to `no` by default? I thought they should be `yes` by default and users should deactivate it if they have a particular reason to avoid some of …
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Hi Micheal (again x2),
I have one observation to report: Indexing Bam files don't work on large genome as Samtools need the '-c' option to index .csi files. I turn around editing the following line…
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Dear UniverSC developers and community,
I am running UniverSC for bd-rhapsody fastqs (cellranger 3.0.2. installed) and the run goes smoothly but there seems to be no barcode match:
**whitelist s…
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I know this was closed in another thread a last month, but having a similar issue using Centos version of sra toolkit. Tried with
```
./prefetch --ngc ../xxx.ngc ../yyy.krt
```
and with:
```
…
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Hi,
I have a somewhat strange issue with `SRR13997822` - while other 104 SRA files from the same dataset have processed normally. Here's the full error:
> 2023-01-07T12:38:56 fastq-dump.2.11.0 …
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[ Code Table Documentation is https://handbook.arctosdb.org/how_to/How-to-Use-Code-Tables.html ]
**Goal**
Make it possible to find genomes through a search of OtherIDs = Genome ID
**Context**
…
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**Describe the bug**
In some cases, when using `SRAweb.sra_metadata` with a single run accession, multiple metadata rows are returned. It would seem more sensible to only return the metadata for the …
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I failed to run `fastq-dump 2.10.0` for some `sra` files.
To check whether the `sra` file is downloaded correctly, I've tried two commands to download the sra: `prefetch` and `fastq-dump`. Also, I'…
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Hi Felix,
I download a few samples from the implication paper (mouse non allelic specific) and I manage to reproduce all the steps in your pipeline, except for the last one. This command:
./filt…
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Hi, I was trying to run a test of scasa on the following SRA sample: https://trace.ncbi.nlm.nih.gov/Traces/?view=run_browser&acc=SRR23717237&display=metadata .
There is an error in the alignment l…