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Hi Jon,
I am trying to run funannotate update in a conda environment on a non-model fish but I get the following error message "Missing Dependencies: fasta. Please install missing dependencies and…
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After spending a week at the GSC meetings and talking to lots of folks, there is still much confusion about Geome’s current configuration options, even among folks who are familiar with the software. …
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Particularly need accession numbers for
```
NR021_S8_L001_R1_001.fastq,NR021_S8_L002_R1_001.fastq \
NR021_S8_L001_R2_001.fastq,NR021_S8_L002_R2_001.fastq \
```
for Emmas paper.
sr320 updated
5 years ago
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I [found a project](https://www.ncbi.nlm.nih.gov/bioproject/419349), probably one of many, that has the following linkout for i5k , under the submission field
http://arthropodgenomes.org/wiki/i5K
…
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According to the manual, after running gene prediction (with RNAseq support), one should run update "to add UTR data to the predictions and fix gene models". When running:
`funannotate update -i M…
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How does one go about making custom genebank files? For instance if I've made large rearrangements of genes or genomic regions - how can I make a custom genebank file for use with Breseq?
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LTLA/basilisk
Confirm the following by editing ea…
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Session Info
```r
R version 3.4.2 (2017-09-28)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Arch Linux
Matrix products: default
BLAS: /usr/lib/libblas.so.3.7.1
LAPACK: /usr/li…
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In this lesson we talk about keeping raw data raw and backing up that data. We often then get questions about what options there might be for storing data. We don't currently have any guidelines, but …
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Description for the field 'lab_name' is 'Department of corresponding author' but the example value is a lab name 'Stibbons Lab'. It is not clear what is expected, if a Department name or a Lab name.
…