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Hi! In your example notebook "pancreas_pipeline.ipynb" the file pancreas_normalized_hvg.h5ad is loaded from "./tests/data/pancreas_normalized_hvg.h5ad". However, the file is not there in the repo. Is …
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Additional codes found by @tahm563 using CPRD Gold code browser. Please, review @finersarah.
Disease | MedCode | ReadCode | ReadTerm
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Primary malignancy pancreatic | 21659 | BB5…
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Hi, I'm curious about the focal_tversky loss can be implemented into a multi class problem?
I saw the model is the sigmoid layer for binary class, how should I modify the loss?
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Hi! Thanks for your code!
I run your code successfully. However, I found the GPU Memory-Usage is very low (138M), though I adjusted the batch size in the "*.json" file. This caused the very low run…
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Dear CellRank Team,
Thanks for your effort to make CellRank so user-friendly.
I was playing around with the pancreas data `datasets/endocrinogenesis_day15.5.h5ad`. After I run `g.compute_macro…
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Hello there, I'm using scvelo and I'm really happy with the functionalities provided (and with the results, as well). I'm now playing with PAGA trees with velocity directed edges and I would like to t…
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@f-eto clinical review complete. Please add the following codes.
17566 | J672.00 | 267 | 0 | 11 | 0 | Cyst and pseudocyst of pancreas | February 2009
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5…
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`specimen_from_organism` documents in the `lungmap` catalog duplicate their `provenance.document_id` value for their `biomaterial_core.biomaterial_id`.
To match values from other catalogs, the `bioma…
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PA is pancreas, a new organ type. Please add this to
constraint "pattern" for both sample_id and tissue_id. Currently, only these are allowed:
"([A-Z]+[0-9]+)-(BL|BR|LB|RB|HT|LK|RK|LI|LV|LL|RL|L…
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scv.pl.scatter cannot generate plot to show transcriptional switches.
I convert seurat object to anndata, and then perform rna velocity (dynamical model) through scVelo. I can generate the heatmap …