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Hello. I used Azimuth continously now for like 8 PBMC datasets, they all went smoothly. On my next run, the AZIMUTH PBMC web app turned white every time I visit it. Whether, I refresh or close it and …
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Hi,
Congratulations on the excellent work!
I was hoping for some help navigating how the reference extension was performed. The code all makes sense until code chunk 30.
Leading up to this, I…
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https://github.com/monarch-initiative/helpdesk/issues/31
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I tried to work on the Harvetta model, in which the LB and UB on the reactions are -1,000,000 and 1,000,000. I was not even able to load the .mat file of the model using jupyter notebbok due to this e…
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Suggested definitions and synonyms for:
UBERON:0009708 dorsal pancreas
Def: The transient embryonic structure that fuses with the ventral pancreas during development to form a single organ; the dors…
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Hi there,
Which env should the scib package to be installed?
Thanks
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I'm having issues performing the conda install of simba. It's giving me some compatibility issues. I managed to install by pip install dev versions of simba and simba_pbg. However, when I train the mo…
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Hi all, I noticed that for some variants HVAR values outputted by VEP (through `--everything`) and dbNSFP v4.1a are different, as example for a file annotated thorugh VEP v103 docker, with command:
`…
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elated to : #1309
We used the SpeciesSubsetterUtil class from owltools-0.3.0 in order to create species specific ontologies.
In the Danio rerio ontology some anatomical entities are missing.
We f…
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Hi Monai Team,
I have trained segmentation model using your code 'spleen_segmentation_3d.ipynb' by using MSD spleen dataset. I have a new spleen dataset, where mask is absent. How to inference these…