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### Data Owner Name
Human PanGenomics Project
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
### Social M…
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Hi,
Thanks for making your scripts to generating a linear pangenome sequence available.
It's working fine for me so far except I came across an issue today which I think is worth looking into.
I…
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Hello, I have a graph I've re-built across several cactus versions. When rebuilding the graph with the recent release, v2.6.1, it seems to fail due to a missing shared object file. I was testing with …
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# nf-core/pangenome feature request
Hi there!
## Describe the solution you'd like
Integrate the [pangenome graph evaluator _`pgge`_](https://github.com/pangenome/pgge).
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I am trying do make a pangenome matrix. The command " ./get_homologues.pl -d genomas_rev19072017 -t 0 -M" gives the following log:
> \# ./get_homologues.pl -i 0 -d genomas_rev19072017 -o 0 -e 0 -f …
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I can not create a intersection using `./compare_clusters.pl` I have checked inside the folders and the .faa and .fna gene clusters are present. Then the error said to review the duplicated.cluster_li…
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I don't understand the 3rd parameter in organisms_fasta_list
`Circular contig identifiers are indicated in the following columns
`
I have a list of fna from Streptococcus suis:
```
SS_0001 /…
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1) Make a reference to the discussion of terms used in the Introduction episode (not developed yet) and the relationship to the terms used by the Pangolin software.
2) Add a solution to the discuss…
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### Data Owner Name
Human PanGenomics Project
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
### Social M…
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**1. What were you trying to do?**
Trying to replicate the Giraffe pipeline from [_A draft human pangenome reference_](https://www.nature.com/articles/s41586-023-05896-x) using the CHM13 pangenom…