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eead-csic-compbio
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get_homologues
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
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RefSeq vs GenBank
#119
michalisgGk
closed
1 week ago
2
Added URLs of dependencies
#118
brunocontrerasmoreira
closed
4 weeks ago
0
HOWTOTettelin is not found
#117
jjv5
closed
2 months ago
2
Restart get_holomogue from blastp results
#116
vincebaby6
closed
2 months ago
4
ANI coding sequences + noncoding?
#115
TommyH-Tran
closed
2 months ago
1
Question about ANI terminology
#114
TommyH-Tran
closed
4 months ago
2
Error while running: executeFORMATDB : cannot find input FASTA file
#113
mauriciolangleib
closed
5 months ago
2
Could not solve for environment specs
#112
iamaizhan
closed
6 months ago
2
Error in input genbank files
#111
DAguileraN
closed
9 months ago
1
Error in Get_homologues analysis
#110
Utk92
closed
9 months ago
1
Removing input files: do I need re-run all the analysis? Or there's another way?
#109
hadassaloth
closed
11 months ago
2
Unable to create venn intersection BDBH, COGS, OMCL
#108
TommyH-Tran
closed
1 year ago
14
Question: Is there a way to identify which genomes correspond to core-genome sample numbers?
#107
TommyH-Tran
closed
1 year ago
10
COGreadblast produce empty results
#106
RiversDong
closed
1 year ago
2
Error: find_COGs
#105
Pirxtrurl
closed
5 months ago
6
Pangenome question
#104
TommyH-Tran
closed
1 year ago
1
File Output?
#103
TommyH-Tran
closed
2 years ago
3
Error with FNA and FAA sequence order
#102
brettChapman
closed
2 years ago
6
Order FASTA sequences and added warnings for CDS-prot mismatches
#101
guignonv
closed
1 year ago
4
Invalid protein cluster files generated by get_homologues-est when .faa and .fna have genes in different order.
#100
guignonv
closed
2 years ago
4
Problem generating alignment file while using annotate_cluster.pl
#99
apoorva004
closed
2 years ago
5
Generating ANI svg is broken
#98
TommyH-Tran
closed
2 years ago
3
core genes list annotations
#97
apoorva004
closed
2 years ago
3
Phylogeny Question
#96
TommyH-Tran
closed
2 years ago
1
Phylogenetic tree not showing strain name
#95
apoorva004
closed
2 years ago
1
maybe a bug in annotate_cluster.pl
#94
carolynzy
closed
2 years ago
2
Issue with Input files not being detected by Get_homologues
#93
apoorva004
closed
2 years ago
6
ANI svg
#92
TommyH-Tran
closed
2 years ago
3
Reporting lineage specific genes?
#91
anandksrao
closed
2 years ago
1
Number of redundant clusters doesn't match
#90
carolynzy
closed
2 years ago
6
clusters lost when using make_nr_pangenome_matrix.pl
#89
carolynzy
closed
2 years ago
8
ERROR when plotting pangenome matrix heatmap
#88
FenggChengg
closed
2 years ago
1
annotate_cluster.pl excludes indentical sequences
#87
carolynzy
closed
2 years ago
5
pangenome_matrix_genes_t0.tab is empty
#86
ireneortega
closed
2 years ago
7
error in plot_matrix_heatmap.sh
#85
byeollee
closed
2 years ago
1
CDS lost in consensus pangenome matrix
#84
ireneortega
closed
2 years ago
1
Duplicate clusters
#83
carolynzy
closed
2 years ago
8
question "_cluster_makeHomolog.pl" command
#82
carolynzy
closed
2 years ago
4
Core genome size abruptly dropping
#81
fermza
closed
2 years ago
4
dryrun.txt file has the same lines for multiple times
#80
carolynzy
closed
3 years ago
26
"out of memory" issue when running parallel in dryrun mode
#79
carolynzy
closed
3 years ago
2
Trouble creating ANI heatplot
#78
TommyH-Tran
closed
3 years ago
3
Why does the pangenome size differ so much?
#77
TommyH-Tran
closed
3 years ago
2
Is there a way to make the pdf outputs from get_homologues into svg files? So, they are easily editable through inkscape or adobe illustrator?
#76
TommyH-Tran
closed
3 years ago
6
Coverage and identity in BLAST alignment
#75
ireneortega
closed
3 years ago
5
files in tmp are not re-used
#74
anacristinareis
closed
3 years ago
10
Problem generating ANI due to missing "factoextra"
#73
TommyH-Tran
closed
3 years ago
2
Number of threads use during clustering
#72
P-Leao
closed
3 years ago
2
program Killed while identifying inparalogs in get_homologous
#71
Dimpledavray287
closed
3 years ago
2
Errror running pfam_enrich.pl
#70
brettChapman
closed
3 years ago
11
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