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Hi, I'm working with the `CometAdapter` and I have some issues. When I search a light file with some variable modifications it works fine. But when I use a quite big file (for instance a 2.2GB mzML) a…
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Hey Zelun & Daniel, I've neglected to show you the "Issues" feature on GitHub. This feature helps us to organize our communication on specific bugs in CaveCrawler and to look back on the fixes for bug…
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Hi Yoshitaka-san,
As you mentioned [AF2-Multimer ](https://colab.research.google.com/github/deepmind/alphafold/blob/main/notebooks/AlphaFold.ipynb)seem to be available now.
Is there a way we can …
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Are we ready to start submitting calculations? We have three molecule collections ready (solvated amino acids, dipeptides, and DES370K). We have agreement on the level of theory to use and what quan…
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Greetings @levitsky,
I am currently analysing open search results from proteomics files from PXD008443. I am consistently experience the error indicated below. Please do advise me on how to trouble…
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Hello,
I have been following along in the Jupyter Notebook tutorial and I am trying to apply it to my own protein. It is a trimer, the problem is that the topology and trajectory files were created…
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atoms_to_points_normals() function was decrbied clearly in your paper. But the trainning process by using mesh ply files from masif preprocessing scripts skipped it.
My question is that, in the infe…
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Hi,
I did run BiocCheck and I know that there are two errors:
[1] "Package must be removed from CRAN."
[2] "Maintainer must regi…
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Now that we have BAOABLangevinIntegrator, we should think about updating our recommended simulation settings. These settings come up in lots of places:
- They're used in examples.
- They're recom…
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SBML L2V2R1
Pages & lines: all of Section 5
Description:
\(The following was originally written by Nicolas.\)
From: Nicolas Le Novere <lenov@ebi.ac.uk>
Sender: sbml-editors-bounces@calt…