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SBML model of OSC_different_vols not loading into moose, with GSL solver
stoich.reacSystemPath = mesh.path + "/##"
RuntimeError: In function: void Stoich::installAndUnschedFunc(Id, Id, double) fil…
hrani updated
2 years ago
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Hi
I don't know if this is the right place or still on sourceforge?
I have CV terms and would like to add them to my model
```perl
$SBML_model->addCVTerm($CV);
```
this first method looks …
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When using ModelPolisher on SBML files without the fbcPlugin, the plugin is enabled. However, due to the enabling, cobraPy sometimes has difficulties reading in the correct information after that.
…
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Hello everyone,
As suggested by one of the contributors by email, I am posting this question here, it might help other people.
**What I am trying to do :** I have downloaded the .mat file from …
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---
id: vcell
version: 7.4.0.48
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.4.0.48/biosimulators.json
specificationsPatch:
version: 7.4.0.48
image:
url: …
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Hi,
I have been using Gapseq with R and it works great, but recently wanted to ensure the quality of the models made using MEMOTE.
When I try running MEMOTE on models made with Gapseq I get the…
thh32 updated
2 years ago
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I'm loading an SBML model for simulation in roadrunner and I'd like to set one of the species in the model to have a constant value (i.e. without editing the SBML file).
For example if my species is…
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#### Problem description
SBML FBC allows genes to be in a model even if there are no GPRs. However, reading such models creates some odd behaviors with cobrapy and breaks round-trips. This behavior…
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---
id: copasi
version: 4.36.260
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COPASI/d916c1dbae69b18118693be707efe64743e25485/biosimulators.json
specificationsP…
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Do you have a method in sbmldiagrams to check if a sbml file has layout and render? If not can you put one?
eg
df = SBMLDiagrams.load(sbmlStr)
if df.hasLayout():
print ("Model has layo…