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MRE
```
import geopandas as gpd
import spatialdata
import spatialdata_plot
from shapely import MultiPolygon, Point, Polygon
points = []
for p in [[0, 0], [0, 1], [1, 1], [1, 0]]:
points.…
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Running my tests with `PYTHONTRACEMALLOC=20` shows the following.
This might be a problem with `responses` itself, but I’m not sure.
```pytb
/usr/lib/python3.11/socket.py:777: ResourceWarning…
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Hello!
I'd like to test LIANA+ with Visium HD data (which can have more than 500k cells/bins/spots). With this being said, I'd like to know if the features are optimized for such high resolution da…
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Splitting out from:
* https://github.com/scverse/anndata/issues/355
Mostly implemented in
* https://github.com/scverse/anndata/pull/1066
Opening this issue to discuss what else is needed …
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Hi @keller-mark,
@lee-t and I were just playing around with pizarr and tried to use it to load some of the SpatialData example datasets from here:
https://spatialdata.scverse.org/en/latest/tutor…
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Hi there,
Thanks for your help so far! I'm wondering about the future of anndata-rs as anndata is continuously changing, especially through integration with RAPIDS. (https://anndata.readthedocs.io/…
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https://mp.weixin.qq.com/s/BnkCf_gyjMGirBJ4SunSNQ
ixxmu updated
5 months ago
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### Pandas version checks
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the [latest version](https://pandas.pydata.org/docs/whatsnew…
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Parasail is highly optimized - but it is invoked for every sequence individually from Python which creates a bottleneck.
We could solve this issue by integrating with external tools that have been d…
grst updated
10 months ago
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- [ ] Additional function parameters / changed functionality / changed defaults?
- [ ] New analysis tool: A simple analysis tool you have been using and are missing in `sc.tools`?
- [x] New plotti…