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### Description of bug
Hi, I am assembling my sequencing data on a cluster but this step takes me more than 12 hours. Is there any problem with it?
### spades.log
[spades.log](https://github.com/ab…
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@dbacsik says:
> N.b. Also note that some of the samples in this pilot were assigned to the wrong sequencing indices, and this notebook manually corrects this in the results folder. This needs to b…
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Here is an outline of a workflow that needs to be enabled in Galaxy to allow variant calling on HIV-1 datasets
- [ ] Upload all datasets for `PRJNA517147`
- [ ] QC with `fastqc` and `multiqc`
…
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I am sorry, if I am asking too simple question but after reading read-me file, I am bit confused by the term unpaired data because I am using pair-end data in fastq file and finally after completion o…
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Heys!
I'm working with whole-genome sequencing of a non-model organism and I was checking the quality of the data with FastQC. As I found that my per tile sequence quality was bad, I started looking …
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I have array genotypes and thus most of Y loci are no known, is it possible to improve algorithm so that it will not assign the wrong haplogroup? For example, our population have no N1a individuals, y…
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VERIS does not currently capture the sequence in which actions happen and attributes are compromised. Add sequencing to VERIS to allow capturing the order of things happening.
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Rather than looking at mutation frequency information from the entire pandemic, we're often only interested in recent sequencing (say, within the last 6 months).
## Handler
[Mutations by lineage…
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Hello,
I would like to assemble chloroplastic DNA using Fast-Plast.
Unfortunately, the process stops after providing 2-Bowtie_index.
Actually, the process is stopped with this error message :…
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Project UUID: 4e6f083b-5b9a-4393-9890-2a83da8188f1
Project Title: The emergent landscape of the mouse gut endoderm at single-cell resolution
Project Short Name: Mouse Endoderm Project
Submission UU…