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VEP runs successfully with no error, but output VCF only contains VCF header of input VCF
I was generally trying to follow the example [here](https://www.ensembl.info/2024/08/09/cool-stuff-ensembl…
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**Species Fungorum Plus** has been exported for the CoL on Feb 2020 / 2020-02-14.
Export to the CoLDP format was produced by Paul Kirk.
- The new dataset brings together **previously independen…
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It would be nice to have empress automatically label internal with a taxonomy if a user provided a taxonomy .qza file. I thought we had this feature already implemented but after a discussion with Imr…
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This issue follows up up on my suggestion in https://github.com/ODM2/ODM2DataSharingPortal/issues/71#issuecomment-365718683 that we pick up the "800-lb gorilla" issue to reimagine variables as we desc…
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I started looking into whether the small models could be a target for interpretability. I'm just putting it out here in lack of a better space to find people wanting to help.
Here is a list of seem…
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| | |
| ---- | ---- |
| **Parent** | |
| **Label** | Event |
| **Definition** | An action that occurs at some location during some time. |
| **Usage** | |
| **Required** | No |
| **Repeata…
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https://hackmd.io/9ORFRJGaTOiOdEAY-Aih2A?view
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# open lab / Sat + Monday , Jul 20 & 22, 2024 / STAMPS 2024
Suggestion for open lab:
* run the commands below on the "canned" data;
* diagr…
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http://onlinelibrary.wiley.com/doi/10.1002/ecy.1569/full
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I found issue #521 but none of the tips there helped in my case.
I am trying to run bactopia on WSL + Ubuntu, fresh install. Installed MambaForge as per the installation instructions, then installed …
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### I installed the package with the following script:
cd /home/lcb
git clone https://github.com/oushujun/EDTA.git
mamba env create -f EDTA_2.2.x.yml
### The installation is as follows:
Name …