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When I turn on assembly in the config, sometimes I see an an `NxmlReader` error that I didn't see otherwise. The stack trace points back to some of the assembly methods. I suspect there is an unexpect…
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@lindseyfaye @rsmoak, let's put together the results we have so far into a PPT format. Perhaps one slide per result + any key method information. I'm currently working on the OrthoMCL results, and pla…
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minimap2 -t 70 -ax map-ont -p 0.99 Homo_sapiens.GRCh38.cdna_all.ncrna.fa combined_T.fastq > E6.sam
samtools view -h E6.sam | awk ' ( $5 > 0 || $1 ~ /SQ/ ) ' | awk ' ( $2 == 0 || $1 ~ /SQ/ ) ' | awk '…
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GO:0010204 defense response signaling pathway, resistance gene-independent
14 EXP annotations
This term should be obsoleted, becasue we shouldn't define things by what they aren't.
This woul…
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CC: @hattrill @vanaukenk
The following terms were requested on TG for use in annotating the paper in this annotation consistency exercise:
http://wiki.geneontology.org/index.php/Annotation_Conf._Ca…
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Could I please ask if OmnipathR provides access to a list of gene pairs?
That is, I would like to get a dataframe where each row corresponds to a pair of genes (or proteins), e.g., *CXCL10* and *CX…
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**HPO term**
HP_0031514 | Increased proportion of exhausted T cells
-- | --
**Suggested revision of textual definition**
1. There isn't a term for 'exhausted T cells' in CL. Should this be ad…
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
3 years ago
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|category|error|class|property|value|
|---|---|---|---|---|
|ERROR|duplicate_definition|Usher syndrome type 1C [MONDO:0010171]|definition [IAO:0000115]|Usher syndrome is a genetic disorder character…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/amcdavid/CellaRepertorium
Confirm the following b…