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With #198, we can use `mcmc` to with `num_chains > 1`. Let's test if it works for all of our examples.
- [x] add `num_chains` args to current examples and test it in Travis
- [x] ~add `num_chains`…
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Doing exact inference for the Moran model is really a type of semi-hidden Markov model, where the states are observed at regular intervals, but inbetween the states are unknown.
Naively, one might …
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These are the current versions:
https://www.dropbox.com/sh/dp26b2w5zt83r6p/AAD3UPkReal_YntKSGnYl_o2a?dl=1
It would be useful if somebody could finish removing terms that we don't think should be i…
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Hi dynverse devs, wow! I am impressed with this project and the effort to make it easy to run many trajectory methods from the same prepared task. I have been testing dyno out with a scRNA dataset wit…
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There is already `@Citation` annotation created for `BEASTObject`, to link the publication to the model and implementation.
I created `PackageCitations` to pull out all citations from installed pac…
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Thanks for your work on the windows fix for HDF5! I've got the package up and running and am able to run the examples. However, I'm running into the following error when I try to run the `ti_paga()` o…
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Hi,
When I use the sample data and try the grandprix method, I meet this error:
> library(dyno)
library(tidyverse)
data("fibroblast_reprogramming_treutlein")
dataset %
add_prior_informat…
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Dear all,
I'm trying to perform inference with Turing onto ODE that is observed in steady-state.
As far as I understand the difference between regular ODE and steady-state solution is that steady-s…
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## 0. gene expression quantification (#8)
* for all datasets ~~where no counts are provided~~, we ~~need to~~ do the preprocessing from FASTQ files ourselves.
* Like this the data is consistently p…
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Now that UMAP is mature, we can get rid of the temporary frozen umap copy, I introduced a year ago for various reasons (see below).
Meanwhile, the following two functions can maybe direcly imported…