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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1315
HK.3+A17612G,T29625C(rev),G29706T
Orf1b:N1382S
Orf10:F23S(rev)
HK.3--XBB.2.3
Breakpoint between 28298 and 29624
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There seems to be another BA.2.86.1+S:A475V+S680F combo .
JN.10+C23601T(S:S680F)
GISAID query: C23601T, T3565C, C22986T
No. of seqs: 52(Austria 1 Canada 1 Denmark 1 UK 23 France 4 Italy 5 Malay…
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_Taken from **Branch 51** of multitask sars-cov-2-variants/lineage-proposals#537_
**Defining Mutations:** EG.5.1.1 > `C10015T` > `G22927T(S:L455F)`
**Query:** `C6541T, C10015T, G22927T, -C4586T`
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This branch was only a small cluster a few days ago, but suddenly expands in Scotland.
JN.1.7.2+G21795T(S:R78M)
GISAID query: G21795T,G18155T
No. of seqs: 35(UK, England 1 Scotland 34)
First…
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The problem pointed out by @wryenmeek in [this thread](https://github.com/OpenUpstate/Discussion/issues/1#issuecomment-46319809) is that every group is using a different tool for managing their inform…
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JN.1+C24023T+C21654T(S:S31F)
GISAID query:C24023T,C21654T,C18894T
No. of seqs: 54(South Korea 53 USA 1)
53 on GISAID , the USA seq not.
GISAID query for S:R346T branch: C24023T,C21654T,C18894T,G…
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*Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/494
Defining mutations:
EG.1.3>G1914A (ORF1a:R550H = NSP2_R370H), T6394A (ORF1a:D2043E = NSP3_D1225E), G15372A, C1…
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One previous singlet gets company. Propose it. Seems to be the first XBB.2.3*/BA.2.86* recomb.
GJ.1.2--JN.1.4
Breakpoint between 8394 and 9865.
![image](https://github.com/sars-cov-2-variants…
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EG.5.1.6+C21772T+T22917G(S:L452R)
There's a large C21772T branch under EG.5.1.6 so this one shall be different from HV.1
GISAID query: C21772T,T22917G,C5835,C29625T
No. of seqs: 27(Austria 15 S…
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_Taken from **Branch 1** of multitask sars-cov-2-variants/lineage-proposals#648_
**Defining Mutations:** `EG.5.1.1` > `G25855C(ORF3a:D155H)` > `T23042C(S:S494P)`
**Query:** `C6541T, T23042C, G2585…