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We have auto-generated content, including uniprot IDs, papers (dois?), etc.
Need:
- somewhere to put it
- somewhere to populate it
- clear links from landing page
Might use Discourse, or po…
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How to predict multi-point combined mutations of proteins？
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Further to the design conversations over at #4 this might be an interesting source of some potential targets?
https://pubs.acs.org/doi/10.1021/acs.jmedchem.1c01139
@edwintse @TomkUCL @jemimahaque - …
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## Describe the issue
We noticed a variant, a single base insertion after the first position of a gene, getting annotated as an upstream_gene_variant with respect to that gene. The distance is then…
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This is a publication that @JonMWilkes has selected to curate.
Curation link
https://canto.phi-base.org/curs/fa48bc08d05f08e3
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Dear developers,
I am using Clipkit and Phykit to create a phylogenomics tree of 26 isolates of a species (+outgroup) on the single-copy unique orthologs.
Once I did the multi-alignments of my pro…
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* **PTHR ID & PTN node:**
GO:0009063 | amino acid catabolic process | IBA with PTN000480319 , locus:2176446 , P38117
* **Sequences with problematic annotation (ID + gene/protein name):**
…
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Hi Christoffer,
Another bug:
chr | start | end | reference | variant | inGene | severity | effect
-- | -- | -- | -- | -- | -- | -- | --
1 | 40150191 | 40150196 | NNNNNN | - | HPCAL4 | 10 | inf…
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Hello I experience some bugs in using genbank_to_virulign.py.
$ python virulign-tools/annotations/genbank_to_virulign.py entero_rhino/NC_002058.3.xml VP1 2480 3385
# run from a jupyter notebook (b…
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Operator for uniform on pInv not created (and thus error thrown about not finding it).