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@TobiasKletter I think it would be necessary to add a screenshot (e.g., ImageJ Orthogonal Views) to the README, explaining the input data requirements are that _both_ the chromatin and tubulin signal …
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I have a BED track loaded into IGV defining a series of chromatin states (1-12). Once loaded, IGV colours these with its own set palette. Is there a way for me to individually colour the different sta…
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Hi, I am reopening the issue located here: https://github.com/timoast/signac/issues/1063
It appears even with the newest version of Signac I still get the same issue. I am not sure if it's because …
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PyGenomeTracks allows one to visualize qualitative data such as "is a peak present or not" – see here with chromatin states –
![image](https://user-images.githubusercontent.com/78431504/120233725-…
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The LocusZoom API has a set of pre-defined BED tracks, such as chromatin state.
Allow users to annotate their plots with a selection of BED tracks, and (optionally) save these tracks as part of the…
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Hi,
I read this paper "Modeling gene regulation from paired expression and chromatin accessibility data" and found this software will be very helpful for my research. My research organism is __Amphi…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/chrarnold/GRaNIE
Confirm the following by editing…
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Hello dear fellows:
When analysis on ATAC-flow with sample sheet by snakepipes(v2.5.0) after DNA_mapping, met CSAW exception but could finish successfully without sample sheet. I also tried on new …
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https://mp.weixin.qq.com/s/PXJ4hyzqoth1nDUWKc028g
ixxmu updated
2 years ago
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Dear all,
The proposal has been made to obsolete GO:0060303 regulation of nucleosome density. The reason for obsoletion is that this represents a readout and in some cases a phenotype, and the ter…