-
```
cmake --build jupyter/build
cmake --install jupyter/build
```
```
[2/144] Building CXX object CMakeFiles/codon_jupyter.dir/jupyter.cpp.o
FAILED: CMakeFiles/codon_jupyter.dir/jupyter.cpp.o
/…
-
Know
Technology
- computer setup pages(s), participants to do it before attending)
- installing / updating cogent3 (PyPl or GitHub). (Advice from Peter M was to do it via conda, but this wo…
-
Hi,
I am trying to run ribotish on human samples with older genome and annotation (gtf) from 2014.
This is the command I ran:
```
ribotish predict \
-b file.bam \
-g Homo_sapiens.GRCh37.75_w…
-
```
What steps will reproduce the problem?
1. Save a Beauti file with the SRD06 setting
2. Reopen the saved file and the settings have reverted to default settings -
see email below for more details.…
-
```
What steps will reproduce the problem?
1. 20 species (is this too many?) 3 mit genes and 2 nuc genes unliked
models all with gtr estimate freq and gamma+i none are partitioned by
codon. Only one i…
-
Hello again.
It appears that the final.ORFs file required for e.g. frameshift potential calculation is an empty file - I created annotation with create_annotation.sh script for yeast and human and i…
-
In the paper, "Functional assessment of cell entry and receptor usage for lineage B beta-coronaviruses" The researchers hypothesis is that a 2nd host must have been involved in the jump to humans. So…
-
```
What steps will reproduce the problem?
1. 20 species (is this too many?) 3 mit genes and 2 nuc genes unliked
models all with gtr estimate freq and gamma+i none are partitioned by
codon. Only one i…
-
I've been using an old version of gffread bundled with cufflinks 2.2.1 to create the transcript sequences given a GTF and genome FASTA. Recently I stumbled on trans-splicing from transcripts originati…
-
Dear hyphy community:
I'm a new one to use hyphy and going to use BUSTED-MH to estimate positive selection anaysis.
However, it runs too slowly, is there any ideas to push the running? BTW, my …