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Hello!
Does the column "variance in the effect size estimate" in the example input file refer to the standard error in an association analysis?
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Dear Nick,
I'm trying to work out a model with complex admixtures starting with a simple one and adding nodes. My starting point was based on a D calculation that wasn't significant, using qpDstat.…
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For long term support of `asap-genetics` to be viable we need to add in some tests.
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Per @mr-c,
Simple examples:
https://github.com/ged-lab/khmer/pull/278
https://github.com/ged-lab/khmer/pull/198
https://github.com/ged-lab/khmer/pull/285
Complicated example: https://github.com/ged-…
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Hi,
Thanks for providing great tool to annotate the STAR-Fusion result.
While using the annotation for RNASeq data, I found some confirmed or discovered fusion pairs are not listed in the existi…
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Hey guys, congratulations for your paper. I would like to rerun your analysis with a different pathway database. Could you please point me to the scripts to rerun the analysis?
Thank you in advance,
…
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Urgency: LOW
Error Message: "AssertionError: invalid value field: value"
Code Snippet (summarised): petl.look(petl.recast(petl.empty()))
Suggestion: A more intuitive error code or catch this exception…
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Initial group info you provided:
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| Name | Department/Program | Expertise/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Samantha Sch…
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I have been trying to set up eCAVIAR and getting it to run on the sample data. Unfortunately, I get an error message that doesn't help much and the website for documentation is not available.
This …
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Dear IUC,
Now that new Stacks 2.** seems to be ok, I am trying to retest old 1.4* Stacks version (1.46 notably), notably for the GCC2019 training thursday....
It seems that for genetics map usag…