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Hi everyone !
Thank you for this amazing and user friendly tool !
I'm doing bulk RNAseq analysis:
- I used fastp for trimming and qc analysis
- STAR for alignement
- UMI Tools for deduplicati…
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running in quay.io/biocontainers/snvphyl-tools:1.8.2--pl5262h779adbc_5
```
. PhyML needs at least three sequences to perform an analysis./data/jobs_directory/000/146/tool_script.sh: line 22: 23 S…
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Dear @mnshgl0110,
I hope this message finds you well. I am reaching out to you because I am currently utilizing Syri, which I find to be an exceptionally useful tool for calling structural variants (…
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Sections 7 to 10 are a list of dot points and I would like to see the details added. A collaborator is considering using Infinium MethylationEPIC arrays for cutaneous squamous cell carcinoma. But, the…
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German;
We're using bamcat/bamsormadup within bcbio to merge 27 input BAMs with:
```
bamcat level=0 `cat files.txt` | bamsormadup threads=8
```
We expect a ~130Gb output file from the merge.
The me…
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Hello,
I would use your software on the maize genome B73 RefGen_v3, is it possible to add it to your annotation database?
Thanks in advance,
Best regards,
Johan35
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I have managed to generate a minimal bam file that reproduces the issue.
First of all, you have to download the mini input.bam file from this dropbox link: https://www.dropbox.com/sh/xae79hanumpire…
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Hello,
I wonder that how many SNPs can handle the NEWHYRIDS program? I installed it to the university server and it is running with ~180GB memory. Do you have any guess for optimal analysis? Thank yo…
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Hi,
I want to used your software to do a QC on my ATACseq data performed on cucumis melo species. I'm wondering if it's possible and how I can integrate my genome on your image ?
Thanks in adv…
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Good morning,
I am working on a project to understand how a particular trait influences the number of genes under positive selection, at the level of the genome, and am using BUSTED-PH.
I have…